Cluster: HRGMv2_4308_CGC41
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4308
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4308_86 | HRGMv2_4308_86_1 | 1 | 1518 | - | 8.A.59.2.1 |
| STP | HRGMv2_4308_86 | HRGMv2_4308_86_2 | 1788 | 3146 | + | SBP_bac_1 |
| TC | HRGMv2_4308_86 | HRGMv2_4308_86_3 | 3253 | 4326 | + | 3.A.1.1.34 |
| TC | HRGMv2_4308_86 | HRGMv2_4308_86_4 | 4339 | 5175 | + | 3.A.1.1.11 |
| CAZyme | HRGMv2_4308_86 | HRGMv2_4308_86_5 | 5259 | 6443 | + | GH88 |
| CAZyme | HRGMv2_4308_86 | HRGMv2_4308_86_6 | 6535 | 8619 | + | PL12_1 |
Gene ID: HRGMv2_4308_86_1
Type: TC
Location: 1 - 1518 (-)
Type: TC
Location: 1 - 1518 (-)
Gene ID: HRGMv2_4308_86_2
Type: STP
Location: 1788 - 3146 (+)
Type: STP
Location: 1788 - 3146 (+)
Gene ID: HRGMv2_4308_86_3
Type: TC
Location: 3253 - 4326 (+)
Type: TC
Location: 3253 - 4326 (+)
Gene ID: HRGMv2_4308_86_4
Type: TC
Location: 4339 - 5175 (+)
Type: TC
Location: 4339 - 5175 (+)
Gene ID: HRGMv2_4308_86_5
Type: CAZyme
Location: 5259 - 6443 (+)
Type: CAZyme
Location: 5259 - 6443 (+)
Gene ID: HRGMv2_4308_86_6
Type: CAZyme
Location: 6535 - 8619 (+)
Type: CAZyme
Location: 6535 - 8619 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Brotaphodocola
Species
Brotaphodocola merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.