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Cluster: HRGMv2_4308_CGC37

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4308_76 HRGMv2_4308_76_1 3 1046 - 2.A.2.1.1
TF HRGMv2_4308_76 HRGMv2_4308_76_2 1243 2118 - HTH_AraC | HTH_AraC
pfam HRGMv2_4308_76 HRGMv2_4308_76_3 2149 2532 - SHOCT
TC HRGMv2_4308_76 HRGMv2_4308_76_4 2607 3164 - 9.B.105.1.3
STP HRGMv2_4308_76 HRGMv2_4308_76_5 3403 4431 + Aminotran_1_2
pfam HRGMv2_4308_76 HRGMv2_4308_76_6 4634 5125 - PNPOx_N | Pyridox_ox_2
CAZyme HRGMv2_4308_76 HRGMv2_4308_76_7 5365 7449 - GH42
NULL(UNKNOWN) HRGMv2_4308_76 HRGMv2_4308_76_8 7545 7766 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_4308_76 HRGMv2_4308_76_9 7739 9592 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4308_76 HRGMv2_4308_76_10 9664 10767 - GH53
TC HRGMv2_4308_76 HRGMv2_4308_76_11 10797 11639 - 3.A.1.1.27
TC HRGMv2_4308_76 HRGMv2_4308_76_12 11639 13081 - 3.A.1.1.27
Gene ID: HRGMv2_4308_76_1
Type: TC
Location: 3 - 1046 (-)
Gene ID: HRGMv2_4308_76_2
Type: TF
Location: 1243 - 2118 (-)
Gene ID: HRGMv2_4308_76_3
Type: pfam
Location: 2149 - 2532 (-)
Gene ID: HRGMv2_4308_76_4
Type: TC
Location: 2607 - 3164 (-)
Gene ID: HRGMv2_4308_76_5
Type: STP
Location: 3403 - 4431 (+)
Gene ID: HRGMv2_4308_76_6
Type: pfam
Location: 4634 - 5125 (-)
Gene ID: HRGMv2_4308_76_7
Type: CAZyme
Location: 5365 - 7449 (-)
Gene ID: HRGMv2_4308_76_8
Type:
Location: 7545 - 7766 (-)
Gene ID: HRGMv2_4308_76_9
Type:
Location: 7739 - 9592 (-)
Gene ID: HRGMv2_4308_76_10
Type: CAZyme
Location: 9664 - 10767 (-)
Gene ID: HRGMv2_4308_76_11
Type: TC
Location: 10797 - 11639 (-)
Gene ID: HRGMv2_4308_76_12
Type: TC
Location: 11639 - 13081 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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