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Cluster: HRGMv2_4308_CGC35

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4308_68 HRGMv2_4308_68_2 265 1626 + 2.A.38.4.1
TC HRGMv2_4308_68 HRGMv2_4308_68_3 1638 2291 + 2.A.38.4.6
TF HRGMv2_4308_68 HRGMv2_4308_68_4 2459 2728 + FUR
STP HRGMv2_4308_68 HRGMv2_4308_68_5 2807 3877 + PALP
TC HRGMv2_4308_68 HRGMv2_4308_68_6 3913 5112 - 2.A.1.21.22
TF HRGMv2_4308_68 HRGMv2_4308_68_7 5105 5959 - HTH_AraC
TC HRGMv2_4308_68 HRGMv2_4308_68_8 6285 7499 + 9.B.10.1.1
pfam HRGMv2_4308_68 HRGMv2_4308_68_9 7518 8468 + cobW | DUF1980_C
peptidase HRGMv2_4308_68 HRGMv2_4308_68_10 8494 9408 + G05.UPW
CAZyme HRGMv2_4308_68 HRGMv2_4308_68_11 9498 10517 + GT2
Gene ID: HRGMv2_4308_68_2
Type: TC
Location: 265 - 1626 (+)
Gene ID: HRGMv2_4308_68_3
Type: TC
Location: 1638 - 2291 (+)
Gene ID: HRGMv2_4308_68_4
Type: TF
Location: 2459 - 2728 (+)
Gene ID: HRGMv2_4308_68_5
Type: STP
Location: 2807 - 3877 (+)
Gene ID: HRGMv2_4308_68_6
Type: TC
Location: 3913 - 5112 (-)
Gene ID: HRGMv2_4308_68_7
Type: TF
Location: 5105 - 5959 (-)
Gene ID: HRGMv2_4308_68_8
Type: TC
Location: 6285 - 7499 (+)
Gene ID: HRGMv2_4308_68_9
Type: pfam
Location: 7518 - 8468 (+)
Gene ID: HRGMv2_4308_68_10
Type: peptidase
Location: 8494 - 9408 (+)
Gene ID: HRGMv2_4308_68_11
Type: CAZyme
Location: 9498 - 10517 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4308_68_6 vegetarian > omnivore 2.96974 0.00614

🧭 Explore Read Mapping of CGC

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