Cluster: HRGMv2_4308_CGC34
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4308
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4308_63 | HRGMv2_4308_63_2 | 925 | 2832 | + | PL33_1 |
| pfam | HRGMv2_4308_63 | HRGMv2_4308_63_3 | 2864 | 3673 | - | S6PP | Hydrolase_3 |
| TC | HRGMv2_4308_63 | HRGMv2_4308_63_4 | 3681 | 5051 | - | 2.A.25.1.9 |
| TF | HRGMv2_4308_63 | HRGMv2_4308_63_5 | 5083 | 5865 | - | HTH_DeoR |
| TC | HRGMv2_4308_63 | HRGMv2_4308_63_6 | 6133 | 7425 | + | 2.A.1.52.1 |
Gene ID: HRGMv2_4308_63_2
Type: CAZyme
Location: 925 - 2832 (+)
Type: CAZyme
Location: 925 - 2832 (+)
Gene ID: HRGMv2_4308_63_3
Type: pfam
Location: 2864 - 3673 (-)
Type: pfam
Location: 2864 - 3673 (-)
Gene ID: HRGMv2_4308_63_4
Type: TC
Location: 3681 - 5051 (-)
Type: TC
Location: 3681 - 5051 (-)
Gene ID: HRGMv2_4308_63_5
Type: TF
Location: 5083 - 5865 (-)
Type: TF
Location: 5083 - 5865 (-)
Gene ID: HRGMv2_4308_63_6
Type: TC
Location: 6133 - 7425 (+)
Type: TC
Location: 6133 - 7425 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Brotaphodocola
Species
Brotaphodocola merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.