Cluster: HRGMv2_4308_CGC27
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4308
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4308_36 | HRGMv2_4308_36_10 | 7714 | 8280 | - | 1.A.62.2.1 |
| pfam | HRGMv2_4308_36 | HRGMv2_4308_36_11 | 8424 | 10718 | - | Aconitase | Aconitase_C |
| TC | HRGMv2_4308_36 | HRGMv2_4308_36_12 | 10734 | 11963 | - | 2.A.23.1.2 |
| pfam | HRGMv2_4308_36 | HRGMv2_4308_36_13 | 11988 | 13190 | - | Ala_racemase_C | Ala_racemase_N |
| TF | HRGMv2_4308_36 | HRGMv2_4308_36_14 | 13327 | 14274 | - | HTH_1 |
| CAZyme | HRGMv2_4308_36 | HRGMv2_4308_36_15 | 14440 | 17082 | - | CBM48 | GH13_9 |
Gene ID: HRGMv2_4308_36_10
Type: TC
Location: 7714 - 8280 (-)
Type: TC
Location: 7714 - 8280 (-)
Gene ID: HRGMv2_4308_36_11
Type: pfam
Location: 8424 - 10718 (-)
Type: pfam
Location: 8424 - 10718 (-)
Gene ID: HRGMv2_4308_36_12
Type: TC
Location: 10734 - 11963 (-)
Type: TC
Location: 10734 - 11963 (-)
Gene ID: HRGMv2_4308_36_13
Type: pfam
Location: 11988 - 13190 (-)
Type: pfam
Location: 11988 - 13190 (-)
Gene ID: HRGMv2_4308_36_14
Type: TF
Location: 13327 - 14274 (-)
Type: TF
Location: 13327 - 14274 (-)
Gene ID: HRGMv2_4308_36_15
Type: CAZyme
Location: 14440 - 17082 (-)
Type: CAZyme
Location: 14440 - 17082 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Brotaphodocola
Species
Brotaphodocola merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.