Cluster: HRGMv2_4308_CGC16
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4308
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4308_14 | HRGMv2_4308_14_16 | 16318 | 17454 | - | GH105 |
| TC | HRGMv2_4308_14 | HRGMv2_4308_14_17 | 17810 | 19162 | + | 3.A.1.1.11 |
| NULL(UNKNOWN) | HRGMv2_4308_14 | HRGMv2_4308_14_18 | 19265 | 19582 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4308_14 | HRGMv2_4308_14_19 | 19611 | 20510 | + | 3.A.1.1.11 |
| TC | HRGMv2_4308_14 | HRGMv2_4308_14_20 | 20516 | 21367 | + | 3.A.1.1.11 |
| CAZyme | HRGMv2_4308_14 | HRGMv2_4308_14_21 | 21454 | 23007 | + | GH28 |
Gene ID: HRGMv2_4308_14_16
Type: CAZyme
Location: 16318 - 17454 (-)
Type: CAZyme
Location: 16318 - 17454 (-)
Gene ID: HRGMv2_4308_14_17
Type: TC
Location: 17810 - 19162 (+)
Type: TC
Location: 17810 - 19162 (+)
Gene ID: HRGMv2_4308_14_18
Type:
Location: 19265 - 19582 (+)
Type:
Location: 19265 - 19582 (+)
Gene ID: HRGMv2_4308_14_19
Type: TC
Location: 19611 - 20510 (+)
Type: TC
Location: 19611 - 20510 (+)
Gene ID: HRGMv2_4308_14_20
Type: TC
Location: 20516 - 21367 (+)
Type: TC
Location: 20516 - 21367 (+)
Gene ID: HRGMv2_4308_14_21
Type: CAZyme
Location: 21454 - 23007 (+)
Type: CAZyme
Location: 21454 - 23007 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Brotaphodocola
Species
Brotaphodocola merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.