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Cluster: HRGMv2_4308_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4308_9 HRGMv2_4308_9_26 25211 26218 + 2.A.56.1.6
pfam HRGMv2_4308_9 HRGMv2_4308_9_27 26234 26728 + DctQ
TC HRGMv2_4308_9 HRGMv2_4308_9_28 26731 28005 + 2.A.56.1.1
pfam HRGMv2_4308_9 HRGMv2_4308_9_29 28122 28895 + adh_short | KR | adh_short_C2
TF HRGMv2_4308_9 HRGMv2_4308_9_30 29586 30608 + LacI
TC HRGMv2_4308_9 HRGMv2_4308_9_31 30628 31647 + 2.A.80.1.4
pfam HRGMv2_4308_9 HRGMv2_4308_9_32 31717 32196 + TctB
TC HRGMv2_4308_9 HRGMv2_4308_9_33 32228 33724 + 2.A.80.1.1
CAZyme HRGMv2_4308_9 HRGMv2_4308_9_34 33721 34872 + GH179
Gene ID: HRGMv2_4308_9_26
Type: TC
Location: 25211 - 26218 (+)
Gene ID: HRGMv2_4308_9_27
Type: pfam
Location: 26234 - 26728 (+)
Gene ID: HRGMv2_4308_9_28
Type: TC
Location: 26731 - 28005 (+)
Gene ID: HRGMv2_4308_9_29
Type: pfam
Location: 28122 - 28895 (+)
Gene ID: HRGMv2_4308_9_30
Type: TF
Location: 29586 - 30608 (+)
Gene ID: HRGMv2_4308_9_31
Type: TC
Location: 30628 - 31647 (+)
Gene ID: HRGMv2_4308_9_32
Type: pfam
Location: 31717 - 32196 (+)
Gene ID: HRGMv2_4308_9_33
Type: TC
Location: 32228 - 33724 (+)
Gene ID: HRGMv2_4308_9_34
Type: CAZyme
Location: 33721 - 34872 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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