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Cluster: HRGMv2_4245_CGC38

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4245_19 HRGMv2_4245_19_2 1296 3395 + GH89
pfam HRGMv2_4245_19 HRGMv2_4245_19_3 3398 6112 + Trehalase | Glyco_hydro_63 | MGH1-like_GH
STP HRGMv2_4245_19 HRGMv2_4245_19_4 6176 7501 + SBP_bac_1
TC HRGMv2_4245_19 HRGMv2_4245_19_5 7585 8469 + 3.A.1.1.20
TC HRGMv2_4245_19 HRGMv2_4245_19_6 8471 9310 + 3.A.1.1.39
CAZyme HRGMv2_4245_19 HRGMv2_4245_19_7 9380 11365 - PL12
NULL(UNKNOWN) HRGMv2_4245_19 HRGMv2_4245_19_8 11376 12986 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4245_19 HRGMv2_4245_19_9 13025 13894 - 3.A.1.1.10
TC HRGMv2_4245_19 HRGMv2_4245_19_10 13909 14865 - 3.A.1.1.10
Gene ID: HRGMv2_4245_19_2
Type: CAZyme
Location: 1296 - 3395 (+)
Gene ID: HRGMv2_4245_19_3
Type: pfam
Location: 3398 - 6112 (+)
Gene ID: HRGMv2_4245_19_4
Type: STP
Location: 6176 - 7501 (+)
Gene ID: HRGMv2_4245_19_5
Type: TC
Location: 7585 - 8469 (+)
Gene ID: HRGMv2_4245_19_6
Type: TC
Location: 8471 - 9310 (+)
Gene ID: HRGMv2_4245_19_7
Type: CAZyme
Location: 9380 - 11365 (-)
Gene ID: HRGMv2_4245_19_8
Type:
Location: 11376 - 12986 (-)
Gene ID: HRGMv2_4245_19_9
Type: TC
Location: 13025 - 13894 (-)
Gene ID: HRGMv2_4245_19_10
Type: TC
Location: 13909 - 14865 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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