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Cluster: HRGMv2_4245_CGC34

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4245_16 HRGMv2_4245_16_36 38475 40112 + 3.A.1.121.4
TF HRGMv2_4245_16 HRGMv2_4245_16_37 40243 41118 - HTH_AraC | HTH_AraC
NULL(UNKNOWN) HRGMv2_4245_16 HRGMv2_4245_16_38 41255 42760 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4245_16 HRGMv2_4245_16_39 42774 45095 + GH106
STP HRGMv2_4245_16 HRGMv2_4245_16_40 45319 46770 + SBP_bac_1
NULL(UNKNOWN) HRGMv2_4245_16 HRGMv2_4245_16_41 46861 47307 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4245_16 HRGMv2_4245_16_42 47307 47795 + 3.A.1.1.20
TC HRGMv2_4245_16 HRGMv2_4245_16_43 47810 48688 + 3.A.1.1.39
TC HRGMv2_4245_16 HRGMv2_4245_16_44 48774 50594 + 8.A.59.2.1
TF HRGMv2_4245_16 HRGMv2_4245_16_45 50597 52216 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_4245_16 HRGMv2_4245_16_46 52234 54249 + PL17_1
Gene ID: HRGMv2_4245_16_36
Type: TC
Location: 38475 - 40112 (+)
Gene ID: HRGMv2_4245_16_37
Type: TF
Location: 40243 - 41118 (-)
Gene ID: HRGMv2_4245_16_38
Type:
Location: 41255 - 42760 (+)
Gene ID: HRGMv2_4245_16_39
Type: CAZyme
Location: 42774 - 45095 (+)
Gene ID: HRGMv2_4245_16_40
Type: STP
Location: 45319 - 46770 (+)
Gene ID: HRGMv2_4245_16_41
Type:
Location: 46861 - 47307 (+)
Gene ID: HRGMv2_4245_16_42
Type: TC
Location: 47307 - 47795 (+)
Gene ID: HRGMv2_4245_16_43
Type: TC
Location: 47810 - 48688 (+)
Gene ID: HRGMv2_4245_16_44
Type: TC
Location: 48774 - 50594 (+)
Gene ID: HRGMv2_4245_16_45
Type: TF
Location: 50597 - 52216 (+)
Gene ID: HRGMv2_4245_16_46
Type: CAZyme
Location: 52234 - 54249 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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