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Cluster: HRGMv2_4242_CGC42

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4242_58 HRGMv2_4242_58_1 133 2241 + CBM34 | GH13_39
STP HRGMv2_4242_58 HRGMv2_4242_58_2 2405 3670 + SBP_bac_1
TC HRGMv2_4242_58 HRGMv2_4242_58_3 3743 4642 + 3.A.1.1.7
TC HRGMv2_4242_58 HRGMv2_4242_58_4 4639 5469 + 3.A.1.1.42
STP HRGMv2_4242_58 HRGMv2_4242_58_5 5476 6321 + PIG-L
CAZyme HRGMv2_4242_58 HRGMv2_4242_58_6 6326 8677 + GH65
NULL(UNKNOWN) HRGMv2_4242_58 HRGMv2_4242_58_7 8661 9527 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_4242_58 HRGMv2_4242_58_8 9793 11319 + HTH_AraC
TC HRGMv2_4242_58 HRGMv2_4242_58_9 11316 13037 + 9.B.33.1.1
Gene ID: HRGMv2_4242_58_1
Type: CAZyme
Location: 133 - 2241 (+)
Gene ID: HRGMv2_4242_58_2
Type: STP
Location: 2405 - 3670 (+)
Gene ID: HRGMv2_4242_58_3
Type: TC
Location: 3743 - 4642 (+)
Gene ID: HRGMv2_4242_58_4
Type: TC
Location: 4639 - 5469 (+)
Gene ID: HRGMv2_4242_58_5
Type: STP
Location: 5476 - 6321 (+)
Gene ID: HRGMv2_4242_58_6
Type: CAZyme
Location: 6326 - 8677 (+)
Gene ID: HRGMv2_4242_58_7
Type:
Location: 8661 - 9527 (+)
Gene ID: HRGMv2_4242_58_8
Type: TF
Location: 9793 - 11319 (+)
Gene ID: HRGMv2_4242_58_9
Type: TC
Location: 11316 - 13037 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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