Cluster: HRGMv2_4241_CGC14
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_4241
- CGC Family ID: CGCFAM_03223
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4241_14 | HRGMv2_4241_14_2 | 791 | 1888 | - | GT4 |
| CAZyme | HRGMv2_4241_14 | HRGMv2_4241_14_3 | 1904 | 2782 | - | GT2 |
| pfam | HRGMv2_4241_14 | HRGMv2_4241_14_4 | 2793 | 3365 | - | Hexapep | Hexapep_2 |
| CAZyme | HRGMv2_4241_14 | HRGMv2_4241_14_5 | 3380 | 4648 | - | GT4 |
| CAZyme | HRGMv2_4241_14 | HRGMv2_4241_14_6 | 5253 | 5894 | - | GT4 |
| NULL(UNKNOWN) | HRGMv2_4241_14 | HRGMv2_4241_14_7 | 5869 | 6279 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_4241_14 | HRGMv2_4241_14_8 | 6289 | 9342 | - | GHMP_kinases_N | Fucose_pyrophosphorylase | GHMP_kinases_C | Hexapep_GlmU |
| TC | HRGMv2_4241_14 | HRGMv2_4241_14_9 | 10163 | 11605 | - | 9.B.18.1.2 |
Gene ID: HRGMv2_4241_14_2
Type: CAZyme
Location: 791 - 1888 (-)
Type: CAZyme
Location: 791 - 1888 (-)
Gene ID: HRGMv2_4241_14_3
Type: CAZyme
Location: 1904 - 2782 (-)
Type: CAZyme
Location: 1904 - 2782 (-)
Gene ID: HRGMv2_4241_14_4
Type: pfam
Location: 2793 - 3365 (-)
Type: pfam
Location: 2793 - 3365 (-)
Gene ID: HRGMv2_4241_14_5
Type: CAZyme
Location: 3380 - 4648 (-)
Type: CAZyme
Location: 3380 - 4648 (-)
Gene ID: HRGMv2_4241_14_6
Type: CAZyme
Location: 5253 - 5894 (-)
Type: CAZyme
Location: 5253 - 5894 (-)
Gene ID: HRGMv2_4241_14_7
Type:
Location: 5869 - 6279 (-)
Type:
Location: 5869 - 6279 (-)
Gene ID: HRGMv2_4241_14_8
Type: pfam
Location: 6289 - 9342 (-)
Type: pfam
Location: 6289 - 9342 (-)
Gene ID: HRGMv2_4241_14_9
Type: TC
Location: 10163 - 11605 (-)
Type: TC
Location: 10163 - 11605 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Oliverpabstia
Species
Oliverpabstia sp002361775
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4241_14_3 | vegan > omnivore | 1.79979 | 0.04027 |
| HRGMv2_4241_14_3 | vegetarian > omnivore | 1.71951 | 0.02628 |
| HRGMv2_4241_14_4 | vegan > omnivore | 1.09833 | 0.04027 |
| HRGMv2_4241_14_4 | vegetarian > omnivore | 1.64590 | 0.02628 |