Cluster: HRGMv2_4241_CGC13
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_4241
- CGC Family ID: CGCFAM_04682
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4241_12 | HRGMv2_4241_12_2 | 499 | 1503 | - | 9.B.10.1.1 |
| NULL(UNKNOWN) | HRGMv2_4241_12 | HRGMv2_4241_12_3 | 1582 | 1818 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | HRGMv2_4241_12 | HRGMv2_4241_12_4 | 2022 | 3047 | + | Aminotran_1_2 |
| CAZyme | HRGMv2_4241_12 | HRGMv2_4241_12_5 | 3089 | 4468 | - | GH29 |
| CAZyme | HRGMv2_4241_12 | HRGMv2_4241_12_6 | 4500 | 6344 | - | GH20 |
| TC | HRGMv2_4241_12 | HRGMv2_4241_12_7 | 6367 | 7278 | - | 3.A.1.1.29 |
| TC | HRGMv2_4241_12 | HRGMv2_4241_12_8 | 7297 | 8211 | - | 3.A.1.1.29 |
| NULL(UNKNOWN) | HRGMv2_4241_12 | HRGMv2_4241_12_9 | 8286 | 10046 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4241_12 | HRGMv2_4241_12_10 | 10298 | 12007 | - | 8.A.59.2.1 |
| TF | HRGMv2_4241_12 | HRGMv2_4241_12_11 | 12004 | 13143 | - | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_4241_12 | HRGMv2_4241_12_12 | 13571 | 15475 | - | CBM48 | GH13_9 |
| CAZyme | HRGMv2_4241_12 | HRGMv2_4241_12_13 | 15508 | 16875 | - | GH13_20 |
Gene ID: HRGMv2_4241_12_2
Type: TC
Location: 499 - 1503 (-)
Type: TC
Location: 499 - 1503 (-)
Gene ID: HRGMv2_4241_12_3
Type:
Location: 1582 - 1818 (-)
Type:
Location: 1582 - 1818 (-)
Gene ID: HRGMv2_4241_12_4
Type: STP
Location: 2022 - 3047 (+)
Type: STP
Location: 2022 - 3047 (+)
Gene ID: HRGMv2_4241_12_5
Type: CAZyme
Location: 3089 - 4468 (-)
Type: CAZyme
Location: 3089 - 4468 (-)
Gene ID: HRGMv2_4241_12_6
Type: CAZyme
Location: 4500 - 6344 (-)
Type: CAZyme
Location: 4500 - 6344 (-)
Gene ID: HRGMv2_4241_12_7
Type: TC
Location: 6367 - 7278 (-)
Type: TC
Location: 6367 - 7278 (-)
Gene ID: HRGMv2_4241_12_8
Type: TC
Location: 7297 - 8211 (-)
Type: TC
Location: 7297 - 8211 (-)
Gene ID: HRGMv2_4241_12_9
Type:
Location: 8286 - 10046 (-)
Type:
Location: 8286 - 10046 (-)
Gene ID: HRGMv2_4241_12_10
Type: TC
Location: 10298 - 12007 (-)
Type: TC
Location: 10298 - 12007 (-)
Gene ID: HRGMv2_4241_12_11
Type: TF
Location: 12004 - 13143 (-)
Type: TF
Location: 12004 - 13143 (-)
Gene ID: HRGMv2_4241_12_12
Type: CAZyme
Location: 13571 - 15475 (-)
Type: CAZyme
Location: 13571 - 15475 (-)
Gene ID: HRGMv2_4241_12_13
Type: CAZyme
Location: 15508 - 16875 (-)
Type: CAZyme
Location: 15508 - 16875 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Oliverpabstia
Species
Oliverpabstia sp002361775
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.