Cluster: HRGMv2_4240_CGC9
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4240
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4240_43 | HRGMv2_4240_43_6 | 2973 | 4907 | - | GH127 |
| pfam | HRGMv2_4240_43 | HRGMv2_4240_43_7 | 4942 | 7491 | - | DUF5695 |
| TC | HRGMv2_4240_43 | HRGMv2_4240_43_8 | 7498 | 8334 | - | 3.A.1.1.44 |
| TC | HRGMv2_4240_43 | HRGMv2_4240_43_9 | 8351 | 9235 | - | 3.A.1.1.37 |
| TC | HRGMv2_4240_43 | HRGMv2_4240_43_10 | 9302 | 10588 | - | 3.A.1.1.41 |
Gene ID: HRGMv2_4240_43_6
Type: CAZyme
Location: 2973 - 4907 (-)
Type: CAZyme
Location: 2973 - 4907 (-)
Gene ID: HRGMv2_4240_43_7
Type: pfam
Location: 4942 - 7491 (-)
Type: pfam
Location: 4942 - 7491 (-)
Gene ID: HRGMv2_4240_43_8
Type: TC
Location: 7498 - 8334 (-)
Type: TC
Location: 7498 - 8334 (-)
Gene ID: HRGMv2_4240_43_9
Type: TC
Location: 8351 - 9235 (-)
Type: TC
Location: 8351 - 9235 (-)
Gene ID: HRGMv2_4240_43_10
Type: TC
Location: 9302 - 10588 (-)
Type: TC
Location: 9302 - 10588 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Merdiplasma
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.