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Cluster: HRGMv2_4240_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4240_57 HRGMv2_4240_57_2 1165 2031 - 2.A.7.2.1
pfam HRGMv2_4240_57 HRGMv2_4240_57_3 2121 3146 - AstE_AspA_cat
NULL(UNKNOWN) HRGMv2_4240_57 HRGMv2_4240_57_4 3161 4483 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4240_57 HRGMv2_4240_57_5 4480 5451 - 3.A.1.5.15
TC HRGMv2_4240_57 HRGMv2_4240_57_6 5444 5995 - 3.A.1.5.41
TC HRGMv2_4240_57 HRGMv2_4240_57_7 6020 7567 - 3.A.1.5.27
TC HRGMv2_4240_57 HRGMv2_4240_57_8 7651 8478 - 3.A.1.5.38
TC HRGMv2_4240_57 HRGMv2_4240_57_9 8480 9418 - 3.A.1.5.3
CAZyme HRGMv2_4240_57 HRGMv2_4240_57_10 10008 11921 + GH127
Gene ID: HRGMv2_4240_57_2
Type: TC
Location: 1165 - 2031 (-)
Gene ID: HRGMv2_4240_57_3
Type: pfam
Location: 2121 - 3146 (-)
Gene ID: HRGMv2_4240_57_4
Type:
Location: 3161 - 4483 (-)
Gene ID: HRGMv2_4240_57_5
Type: TC
Location: 4480 - 5451 (-)
Gene ID: HRGMv2_4240_57_6
Type: TC
Location: 5444 - 5995 (-)
Gene ID: HRGMv2_4240_57_7
Type: TC
Location: 6020 - 7567 (-)
Gene ID: HRGMv2_4240_57_8
Type: TC
Location: 7651 - 8478 (-)
Gene ID: HRGMv2_4240_57_9
Type: TC
Location: 8480 - 9418 (-)
Gene ID: HRGMv2_4240_57_10
Type: CAZyme
Location: 10008 - 11921 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
Merdiplasma
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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