Cluster: HRGMv2_4240_CGC11
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4240
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4240_55 | HRGMv2_4240_55_4 | 2342 | 3931 | - | GH78 |
| pfam | HRGMv2_4240_55 | HRGMv2_4240_55_5 | 4164 | 4481 | - | ParE_toxin |
| pfam | HRGMv2_4240_55 | HRGMv2_4240_55_6 | 4485 | 4751 | - | PhdYeFM_antitox |
| TC | HRGMv2_4240_55 | HRGMv2_4240_55_7 | 5050 | 7674 | - | 4.A.2.1.17 |
Gene ID: HRGMv2_4240_55_4
Type: CAZyme
Location: 2342 - 3931 (-)
Type: CAZyme
Location: 2342 - 3931 (-)
Gene ID: HRGMv2_4240_55_5
Type: pfam
Location: 4164 - 4481 (-)
Type: pfam
Location: 4164 - 4481 (-)
Gene ID: HRGMv2_4240_55_6
Type: pfam
Location: 4485 - 4751 (-)
Type: pfam
Location: 4485 - 4751 (-)
Gene ID: HRGMv2_4240_55_7
Type: TC
Location: 5050 - 7674 (-)
Type: TC
Location: 5050 - 7674 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Merdiplasma
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4240_55_5 | vegan > omnivore | 3.14738 | 0.01276 |
| HRGMv2_4240_55_6 | vegan > omnivore | 2.71122 | 0.01276 |