Cluster: HRGMv2_4238_CGC34
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4238
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4238_50 | HRGMv2_4238_50_11 | 12678 | 15347 | - | 3.A.3.2.21 |
| pfam | HRGMv2_4238_50 | HRGMv2_4238_50_12 | 15549 | 15917 | + | SnoaL | SnoaL_2 |
| pfam | HRGMv2_4238_50 | HRGMv2_4238_50_13 | 15997 | 16797 | - | adh_short | KR | adh_short_C2 |
| CAZyme | HRGMv2_4238_50 | HRGMv2_4238_50_14 | 17018 | 19267 | - | GH2 |
Gene ID: HRGMv2_4238_50_11
Type: TC
Location: 12678 - 15347 (-)
Type: TC
Location: 12678 - 15347 (-)
Gene ID: HRGMv2_4238_50_12
Type: pfam
Location: 15549 - 15917 (+)
Type: pfam
Location: 15549 - 15917 (+)
Gene ID: HRGMv2_4238_50_13
Type: pfam
Location: 15997 - 16797 (-)
Type: pfam
Location: 15997 - 16797 (-)
Gene ID: HRGMv2_4238_50_14
Type: CAZyme
Location: 17018 - 19267 (-)
Type: CAZyme
Location: 17018 - 19267 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
14-2
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4238_50_13 | vegetarian > omnivore | 1.01119 | 0.03196 |
| HRGMv2_4238_50_13 | vegetarian > vegan | 1.20532 | 0.03201 |