Cluster: HRGMv2_4238_CGC30
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4238
- CGC Family ID: CGCFAM_04593
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4238_34 | HRGMv2_4238_34_17 | 21998 | 22780 | + | 3.A.1.17.8 |
| TC | HRGMv2_4238_34 | HRGMv2_4238_34_18 | 22770 | 23810 | + | 3.A.1.17.8 |
| TC | HRGMv2_4238_34 | HRGMv2_4238_34_19 | 23836 | 24633 | + | 3.A.1.17.13 |
| CAZyme | HRGMv2_4238_34 | HRGMv2_4238_34_20 | 24651 | 25388 | - | GH23 |
| TC | HRGMv2_4238_34 | HRGMv2_4238_34_21 | 25567 | 26313 | + | 2.A.78.1.1 |
| TC | HRGMv2_4238_34 | HRGMv2_4238_34_22 | 26303 | 26638 | + | 2.A.78.1.1 |
Gene ID: HRGMv2_4238_34_17
Type: TC
Location: 21998 - 22780 (+)
Type: TC
Location: 21998 - 22780 (+)
Gene ID: HRGMv2_4238_34_18
Type: TC
Location: 22770 - 23810 (+)
Type: TC
Location: 22770 - 23810 (+)
Gene ID: HRGMv2_4238_34_19
Type: TC
Location: 23836 - 24633 (+)
Type: TC
Location: 23836 - 24633 (+)
Gene ID: HRGMv2_4238_34_20
Type: CAZyme
Location: 24651 - 25388 (-)
Type: CAZyme
Location: 24651 - 25388 (-)
Gene ID: HRGMv2_4238_34_21
Type: TC
Location: 25567 - 26313 (+)
Type: TC
Location: 25567 - 26313 (+)
Gene ID: HRGMv2_4238_34_22
Type: TC
Location: 26303 - 26638 (+)
Type: TC
Location: 26303 - 26638 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
14-2
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.