Cluster: HRGMv2_4238_CGC24
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4238
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4238_22 | HRGMv2_4238_22_7 | 6977 | 8713 | - | 1.B.52.2.1 |
| pfam | HRGMv2_4238_22 | HRGMv2_4238_22_8 | 8970 | 9608 | - | Hydrolase | HAD_2 |
| CAZyme | HRGMv2_4238_22 | HRGMv2_4238_22_9 | 9698 | 12460 | - | CBM67 | GH78 |
| STP | HRGMv2_4238_22 | HRGMv2_4238_22_10 | 12464 | 13324 | - | GGDEF |
| STP | HRGMv2_4238_22 | HRGMv2_4238_22_11 | 13321 | 14370 | - | Peripla_BP_3 |
| CAZyme | HRGMv2_4238_22 | HRGMv2_4238_22_12 | 14535 | 16229 | - | GH3 |
| pfam | HRGMv2_4238_22 | HRGMv2_4238_22_13 | 16351 | 17358 | - | BPD_transp_2 |
| NULL(UNKNOWN) | HRGMv2_4238_22 | HRGMv2_4238_22_14 | 17450 | 18715 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4238_22 | HRGMv2_4238_22_15 | 18822 | 19817 | - | 3.A.1.2.1 |
| TC | HRGMv2_4238_22 | HRGMv2_4238_22_16 | 19847 | 21355 | - | 3.A.1.2.13 |
| CAZyme | HRGMv2_4238_22 | HRGMv2_4238_22_17 | 21629 | 24139 | + | GH39 |
Gene ID: HRGMv2_4238_22_7
Type: TC
Location: 6977 - 8713 (-)
Type: TC
Location: 6977 - 8713 (-)
Gene ID: HRGMv2_4238_22_8
Type: pfam
Location: 8970 - 9608 (-)
Type: pfam
Location: 8970 - 9608 (-)
Gene ID: HRGMv2_4238_22_9
Type: CAZyme
Location: 9698 - 12460 (-)
Type: CAZyme
Location: 9698 - 12460 (-)
Gene ID: HRGMv2_4238_22_10
Type: STP
Location: 12464 - 13324 (-)
Type: STP
Location: 12464 - 13324 (-)
Gene ID: HRGMv2_4238_22_11
Type: STP
Location: 13321 - 14370 (-)
Type: STP
Location: 13321 - 14370 (-)
Gene ID: HRGMv2_4238_22_12
Type: CAZyme
Location: 14535 - 16229 (-)
Type: CAZyme
Location: 14535 - 16229 (-)
Gene ID: HRGMv2_4238_22_13
Type: pfam
Location: 16351 - 17358 (-)
Type: pfam
Location: 16351 - 17358 (-)
Gene ID: HRGMv2_4238_22_14
Type:
Location: 17450 - 18715 (-)
Type:
Location: 17450 - 18715 (-)
Gene ID: HRGMv2_4238_22_15
Type: TC
Location: 18822 - 19817 (-)
Type: TC
Location: 18822 - 19817 (-)
Gene ID: HRGMv2_4238_22_16
Type: TC
Location: 19847 - 21355 (-)
Type: TC
Location: 19847 - 21355 (-)
Gene ID: HRGMv2_4238_22_17
Type: CAZyme
Location: 21629 - 24139 (+)
Type: CAZyme
Location: 21629 - 24139 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
14-2
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.