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Cluster: HRGMv2_4238_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4238_19 HRGMv2_4238_19_16 21893 22846 - 3.A.1.2.1
TC HRGMv2_4238_19 HRGMv2_4238_19_17 22848 24323 - 3.A.1.2.20
TC HRGMv2_4238_19 HRGMv2_4238_19_18 24419 25396 - 3.A.1.2.1
pfam HRGMv2_4238_19 HRGMv2_4238_19_19 25408 26376 - Peripla_BP_4
TC HRGMv2_4238_19 HRGMv2_4238_19_20 26487 27941 - 3.A.1.2.4
TC HRGMv2_4238_19 HRGMv2_4238_19_21 27944 28984 - 8.A.59.2.1
TF HRGMv2_4238_19 HRGMv2_4238_19_22 29053 30660 - HTH_AraC | HTH_AraC
pfam HRGMv2_4238_19 HRGMv2_4238_19_23 30839 31759 - AP_endonuc_2
CAZyme HRGMv2_4238_19 HRGMv2_4238_19_24 31835 32947 - GH179
CAZyme HRGMv2_4238_19 HRGMv2_4238_19_25 32960 34009 - GH109
Gene ID: HRGMv2_4238_19_16
Type: TC
Location: 21893 - 22846 (-)
Gene ID: HRGMv2_4238_19_17
Type: TC
Location: 22848 - 24323 (-)
Gene ID: HRGMv2_4238_19_18
Type: TC
Location: 24419 - 25396 (-)
Gene ID: HRGMv2_4238_19_19
Type: pfam
Location: 25408 - 26376 (-)
Gene ID: HRGMv2_4238_19_20
Type: TC
Location: 26487 - 27941 (-)
Gene ID: HRGMv2_4238_19_21
Type: TC
Location: 27944 - 28984 (-)
Gene ID: HRGMv2_4238_19_22
Type: TF
Location: 29053 - 30660 (-)
Gene ID: HRGMv2_4238_19_23
Type: pfam
Location: 30839 - 31759 (-)
Gene ID: HRGMv2_4238_19_24
Type: CAZyme
Location: 31835 - 32947 (-)
Gene ID: HRGMv2_4238_19_25
Type: CAZyme
Location: 32960 - 34009 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
14-2
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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