Cluster: HRGMv2_4238_CGC12
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4238
- CGC Family ID: CGCFAM_00021
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4238_11 | HRGMv2_4238_11_33 | 39681 | 40613 | + | 3.A.1.1.10 |
| TC | HRGMv2_4238_11 | HRGMv2_4238_11_34 | 40632 | 41522 | + | 3.A.1.1.29 |
| TC | HRGMv2_4238_11 | HRGMv2_4238_11_35 | 41527 | 43680 | + | 1.B.52.2.2 |
| CAZyme | HRGMv2_4238_11 | HRGMv2_4238_11_36 | 43712 | 44491 | + | CE1 |
| CAZyme | HRGMv2_4238_11 | HRGMv2_4238_11_37 | 44504 | 46222 | + | GH3 |
Gene ID: HRGMv2_4238_11_33
Type: TC
Location: 39681 - 40613 (+)
Type: TC
Location: 39681 - 40613 (+)
Gene ID: HRGMv2_4238_11_34
Type: TC
Location: 40632 - 41522 (+)
Type: TC
Location: 40632 - 41522 (+)
Gene ID: HRGMv2_4238_11_35
Type: TC
Location: 41527 - 43680 (+)
Type: TC
Location: 41527 - 43680 (+)
Gene ID: HRGMv2_4238_11_36
Type: CAZyme
Location: 43712 - 44491 (+)
Type: CAZyme
Location: 43712 - 44491 (+)
Gene ID: HRGMv2_4238_11_37
Type: CAZyme
Location: 44504 - 46222 (+)
Type: CAZyme
Location: 44504 - 46222 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
14-2
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.