Cluster: HRGMv2_4238_CGC11
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4238
- CGC Family ID: CGCFAM_08721
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4238_9 | HRGMv2_4238_9_44 | 47086 | 47820 | - | CE4 |
| pfam | HRGMv2_4238_9 | HRGMv2_4238_9_45 | 47876 | 49060 | - | Lipase_GDSL | Lipase_GDSL_2 |
| TC | HRGMv2_4238_9 | HRGMv2_4238_9_46 | 49087 | 51171 | - | 1.B.52.2.2 |
| CAZyme | HRGMv2_4238_9 | HRGMv2_4238_9_47 | 51193 | 52032 | - | CE1 |
| pfam | HRGMv2_4238_9 | HRGMv2_4238_9_48 | 52080 | 52904 | - | DUF34_NIF3 |
| pfam | HRGMv2_4238_9 | HRGMv2_4238_9_49 | 52914 | 53333 | - | DUF3237 |
| CAZyme | HRGMv2_4238_9 | HRGMv2_4238_9_50 | 53363 | 54883 | - | GH13_18 |
| NULL(UNKNOWN) | HRGMv2_4238_9 | HRGMv2_4238_9_51 | 54880 | 55842 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4238_9 | HRGMv2_4238_9_52 | 55901 | 56791 | - | 3.A.1.1.29 |
| TC | HRGMv2_4238_9 | HRGMv2_4238_9_53 | 56804 | 57730 | - | 3.A.1.1.29 |
| STP | HRGMv2_4238_9 | HRGMv2_4238_9_54 | 57746 | 59311 | - | SBP_bac_1 |
| TF | HRGMv2_4238_9 | HRGMv2_4238_9_55 | 59419 | 60996 | - | HTH_AraC |
| TC | HRGMv2_4238_9 | HRGMv2_4238_9_56 | 61016 | 62731 | - | 9.B.33.1.2 |
| STP | HRGMv2_4238_9 | HRGMv2_4238_9_57 | 63583 | 65421 | - | GGDEF |
| STP | HRGMv2_4238_9 | HRGMv2_4238_9_58 | 65433 | 66779 | - | GGDEF |
| TC | HRGMv2_4238_9 | HRGMv2_4238_9_59 | 66809 | 68599 | - | 3.A.1.135.7 |
| TC | HRGMv2_4238_9 | HRGMv2_4238_9_60 | 68589 | 70400 | - | 3.A.1.135.7 |
Gene ID: HRGMv2_4238_9_44
Type: CAZyme
Location: 47086 - 47820 (-)
Type: CAZyme
Location: 47086 - 47820 (-)
Gene ID: HRGMv2_4238_9_45
Type: pfam
Location: 47876 - 49060 (-)
Type: pfam
Location: 47876 - 49060 (-)
Gene ID: HRGMv2_4238_9_46
Type: TC
Location: 49087 - 51171 (-)
Type: TC
Location: 49087 - 51171 (-)
Gene ID: HRGMv2_4238_9_47
Type: CAZyme
Location: 51193 - 52032 (-)
Type: CAZyme
Location: 51193 - 52032 (-)
Gene ID: HRGMv2_4238_9_48
Type: pfam
Location: 52080 - 52904 (-)
Type: pfam
Location: 52080 - 52904 (-)
Gene ID: HRGMv2_4238_9_49
Type: pfam
Location: 52914 - 53333 (-)
Type: pfam
Location: 52914 - 53333 (-)
Gene ID: HRGMv2_4238_9_50
Type: CAZyme
Location: 53363 - 54883 (-)
Type: CAZyme
Location: 53363 - 54883 (-)
Gene ID: HRGMv2_4238_9_51
Type:
Location: 54880 - 55842 (-)
Type:
Location: 54880 - 55842 (-)
Gene ID: HRGMv2_4238_9_52
Type: TC
Location: 55901 - 56791 (-)
Type: TC
Location: 55901 - 56791 (-)
Gene ID: HRGMv2_4238_9_53
Type: TC
Location: 56804 - 57730 (-)
Type: TC
Location: 56804 - 57730 (-)
Gene ID: HRGMv2_4238_9_54
Type: STP
Location: 57746 - 59311 (-)
Type: STP
Location: 57746 - 59311 (-)
Gene ID: HRGMv2_4238_9_55
Type: TF
Location: 59419 - 60996 (-)
Type: TF
Location: 59419 - 60996 (-)
Gene ID: HRGMv2_4238_9_56
Type: TC
Location: 61016 - 62731 (-)
Type: TC
Location: 61016 - 62731 (-)
Gene ID: HRGMv2_4238_9_57
Type: STP
Location: 63583 - 65421 (-)
Type: STP
Location: 63583 - 65421 (-)
Gene ID: HRGMv2_4238_9_58
Type: STP
Location: 65433 - 66779 (-)
Type: STP
Location: 65433 - 66779 (-)
Gene ID: HRGMv2_4238_9_59
Type: TC
Location: 66809 - 68599 (-)
Type: TC
Location: 66809 - 68599 (-)
Gene ID: HRGMv2_4238_9_60
Type: TC
Location: 68589 - 70400 (-)
Type: TC
Location: 68589 - 70400 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
14-2
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.