Cluster: HRGMv2_4234_CGC8
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4234
- CGC Family ID: CGCFAM_06276
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4234_11 | HRGMv2_4234_11_2 | 567 | 1259 | + | 2.A.122.1.4 |
| CAZyme | HRGMv2_4234_11 | HRGMv2_4234_11_3 | 1444 | 7488 | + | GH101 |
| CAZyme | HRGMv2_4234_11 | HRGMv2_4234_11_4 | 7770 | 13778 | + | GH101 |
| pfam | HRGMv2_4234_11 | HRGMv2_4234_11_5 | 13944 | 15278 | - | ELFV_dehydrog | ELFV_dehydrog_N |
| TC | HRGMv2_4234_11 | HRGMv2_4234_11_6 | 15540 | 17924 | + | 3.A.3.23.2 |
| NULL(UNKNOWN) | HRGMv2_4234_11 | HRGMv2_4234_11_7 | 18432 | 18806 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4234_11 | HRGMv2_4234_11_8 | 18926 | 20323 | + | 2.A.22.5.3 |
Gene ID: HRGMv2_4234_11_2
Type: TC
Location: 567 - 1259 (+)
Type: TC
Location: 567 - 1259 (+)
Gene ID: HRGMv2_4234_11_3
Type: CAZyme
Location: 1444 - 7488 (+)
Type: CAZyme
Location: 1444 - 7488 (+)
Gene ID: HRGMv2_4234_11_4
Type: CAZyme
Location: 7770 - 13778 (+)
Type: CAZyme
Location: 7770 - 13778 (+)
Gene ID: HRGMv2_4234_11_5
Type: pfam
Location: 13944 - 15278 (-)
Type: pfam
Location: 13944 - 15278 (-)
Gene ID: HRGMv2_4234_11_6
Type: TC
Location: 15540 - 17924 (+)
Type: TC
Location: 15540 - 17924 (+)
Gene ID: HRGMv2_4234_11_7
Type:
Location: 18432 - 18806 (+)
Type:
Location: 18432 - 18806 (+)
Gene ID: HRGMv2_4234_11_8
Type: TC
Location: 18926 - 20323 (+)
Type: TC
Location: 18926 - 20323 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Hominisplanchenecus_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.