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Cluster: HRGMv2_4234_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4234_6 HRGMv2_4234_6_21 20726 22651 - 3.A.16.1.2
pfam HRGMv2_4234_6 HRGMv2_4234_6_22 22838 24316 + DUF1846 | DUF1846_C
STP HRGMv2_4234_6 HRGMv2_4234_6_23 24651 26255 + CbiA
CAZyme HRGMv2_4234_6 HRGMv2_4234_6_24 26329 27444 - CE9
sulfatase HRGMv2_4234_6 HRGMv2_4234_6_25 27520 28248 - S1_9
pfam HRGMv2_4234_6 HRGMv2_4234_6_26 28268 28873 - CBM9_2
CAZyme HRGMv2_4234_6 HRGMv2_4234_6_27 28955 30076 - CE4
TC HRGMv2_4234_6 HRGMv2_4234_6_28 30094 30777 - 9.B.120.1.2
Gene ID: HRGMv2_4234_6_21
Type: TC
Location: 20726 - 22651 (-)
Gene ID: HRGMv2_4234_6_22
Type: pfam
Location: 22838 - 24316 (+)
Gene ID: HRGMv2_4234_6_23
Type: STP
Location: 24651 - 26255 (+)
Gene ID: HRGMv2_4234_6_24
Type: CAZyme
Location: 26329 - 27444 (-)
Gene ID: HRGMv2_4234_6_25
Type: sulfatase
Location: 27520 - 28248 (-)
Gene ID: HRGMv2_4234_6_26
Type: pfam
Location: 28268 - 28873 (-)
Gene ID: HRGMv2_4234_6_27
Type: CAZyme
Location: 28955 - 30076 (-)
Gene ID: HRGMv2_4234_6_28
Type: TC
Location: 30094 - 30777 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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