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Cluster: HRGMv2_4234_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4234_35 HRGMv2_4234_35_2 139 891 - 3.A.1.103.1
TC HRGMv2_4234_35 HRGMv2_4234_35_3 929 1723 - 3.A.1.103.4
CAZyme HRGMv2_4234_35 HRGMv2_4234_35_4 1720 2727 - GT2
CAZyme HRGMv2_4234_35 HRGMv2_4234_35_5 2720 3853 - GT2
CAZyme HRGMv2_4234_35 HRGMv2_4234_35_6 3855 5012 - GT2
pfam HRGMv2_4234_35 HRGMv2_4234_35_7 5190 6491 + UDPG_MGDP_dh | 3HCDH_N | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
CAZyme HRGMv2_4234_35 HRGMv2_4234_35_8 6552 7733 - GT2
CAZyme HRGMv2_4234_35 HRGMv2_4234_35_9 7740 8585 - GT2
TC HRGMv2_4234_35 HRGMv2_4234_35_10 8537 9925 - 9.B.18.1.3
Gene ID: HRGMv2_4234_35_2
Type: TC
Location: 139 - 891 (-)
Gene ID: HRGMv2_4234_35_3
Type: TC
Location: 929 - 1723 (-)
Gene ID: HRGMv2_4234_35_4
Type: CAZyme
Location: 1720 - 2727 (-)
Gene ID: HRGMv2_4234_35_5
Type: CAZyme
Location: 2720 - 3853 (-)
Gene ID: HRGMv2_4234_35_6
Type: CAZyme
Location: 3855 - 5012 (-)
Gene ID: HRGMv2_4234_35_7
Type: pfam
Location: 5190 - 6491 (+)
Gene ID: HRGMv2_4234_35_8
Type: CAZyme
Location: 6552 - 7733 (-)
Gene ID: HRGMv2_4234_35_9
Type: CAZyme
Location: 7740 - 8585 (-)
Gene ID: HRGMv2_4234_35_10
Type: TC
Location: 8537 - 9925 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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