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Cluster: HRGMv2_4216_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4216_4 HRGMv2_4216_4_27 25856 26161 + 4.A.3.2.8
TC HRGMv2_4216_4 HRGMv2_4216_4_28 26165 27478 + 4.A.3.2.4
pfam HRGMv2_4216_4 HRGMv2_4216_4_29 27488 27913 + DUF3284
TF HRGMv2_4216_4 HRGMv2_4216_4_30 27906 28547 + GntR
CAZyme HRGMv2_4216_4 HRGMv2_4216_4_31 28560 29936 + GH1
TC HRGMv2_4216_4 HRGMv2_4216_4_32 29945 30262 + 4.A.3.2.2
NULL(UNKNOWN) HRGMv2_4216_4 HRGMv2_4216_4_33 30445 32196 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_4216_4 HRGMv2_4216_4_34 32515 33807 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4216_4 HRGMv2_4216_4_35 34024 34752 + 3.A.1.17.13
TC HRGMv2_4216_4 HRGMv2_4216_4_36 34764 35738 + 3.A.1.17.8
TC HRGMv2_4216_4 HRGMv2_4216_4_37 35719 36429 + 3.A.1.17.13
Gene ID: HRGMv2_4216_4_27
Type: TC
Location: 25856 - 26161 (+)
Gene ID: HRGMv2_4216_4_28
Type: TC
Location: 26165 - 27478 (+)
Gene ID: HRGMv2_4216_4_29
Type: pfam
Location: 27488 - 27913 (+)
Gene ID: HRGMv2_4216_4_30
Type: TF
Location: 27906 - 28547 (+)
Gene ID: HRGMv2_4216_4_31
Type: CAZyme
Location: 28560 - 29936 (+)
Gene ID: HRGMv2_4216_4_32
Type: TC
Location: 29945 - 30262 (+)
Gene ID: HRGMv2_4216_4_33
Type:
Location: 30445 - 32196 (+)
Gene ID: HRGMv2_4216_4_34
Type:
Location: 32515 - 33807 (+)
Gene ID: HRGMv2_4216_4_35
Type: TC
Location: 34024 - 34752 (+)
Gene ID: HRGMv2_4216_4_36
Type: TC
Location: 34764 - 35738 (+)
Gene ID: HRGMv2_4216_4_37
Type: TC
Location: 35719 - 36429 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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