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Cluster: HRGMv2_4216_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4216_13 HRGMv2_4216_13_22 24364 25860 - GH77
TF HRGMv2_4216_13 HRGMv2_4216_13_23 25857 26849 - LacI
TC HRGMv2_4216_13 HRGMv2_4216_13_24 26862 27929 - 3.A.1.1.46
TC HRGMv2_4216_13 HRGMv2_4216_13_25 27936 28832 - 3.A.1.1.26
TC HRGMv2_4216_13 HRGMv2_4216_13_26 28832 30850 - 3.A.1.1.2
NULL(UNKNOWN) HRGMv2_4216_13 HRGMv2_4216_13_27 30852 31253 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_4216_13 HRGMv2_4216_13_28 31303 32601 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4216_13 HRGMv2_4216_13_29 32687 34279 - CBM34 | GH13_20
pfam HRGMv2_4216_13 HRGMv2_4216_13_30 34414 35244 + PEP-utilizers_C
pfam HRGMv2_4216_13 HRGMv2_4216_13_31 35682 36158 - DNA_binding_1 | Methyltransf_1N
TC HRGMv2_4216_13 HRGMv2_4216_13_32 36168 37148 - 2.A.98.1.3
NULL(UNKNOWN) HRGMv2_4216_13 HRGMv2_4216_13_33 37388 37996 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4216_13 HRGMv2_4216_13_34 37978 38736 + 3.A.1.17.2
TC HRGMv2_4216_13 HRGMv2_4216_13_35 38723 39418 + 3.A.1.16.2
Gene ID: HRGMv2_4216_13_22
Type: CAZyme
Location: 24364 - 25860 (-)
Gene ID: HRGMv2_4216_13_23
Type: TF
Location: 25857 - 26849 (-)
Gene ID: HRGMv2_4216_13_24
Type: TC
Location: 26862 - 27929 (-)
Gene ID: HRGMv2_4216_13_25
Type: TC
Location: 27936 - 28832 (-)
Gene ID: HRGMv2_4216_13_26
Type: TC
Location: 28832 - 30850 (-)
Gene ID: HRGMv2_4216_13_27
Type:
Location: 30852 - 31253 (-)
Gene ID: HRGMv2_4216_13_28
Type:
Location: 31303 - 32601 (-)
Gene ID: HRGMv2_4216_13_29
Type: CAZyme
Location: 32687 - 34279 (-)
Gene ID: HRGMv2_4216_13_30
Type: pfam
Location: 34414 - 35244 (+)
Gene ID: HRGMv2_4216_13_31
Type: pfam
Location: 35682 - 36158 (-)
Gene ID: HRGMv2_4216_13_32
Type: TC
Location: 36168 - 37148 (-)
Gene ID: HRGMv2_4216_13_33
Type:
Location: 37388 - 37996 (+)
Gene ID: HRGMv2_4216_13_34
Type: TC
Location: 37978 - 38736 (+)
Gene ID: HRGMv2_4216_13_35
Type: TC
Location: 38723 - 39418 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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