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Cluster: HRGMv2_4201_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4201_28 HRGMv2_4201_28_11 8956 10290 - 2.A.66.1.37
TF HRGMv2_4201_28 HRGMv2_4201_28_12 10357 11169 + MerR
pfam HRGMv2_4201_28 HRGMv2_4201_28_13 11189 12217 - DAHP_synth_1
TC HRGMv2_4201_28 HRGMv2_4201_28_14 12301 13662 + 2.A.66.1.32
TC HRGMv2_4201_28 HRGMv2_4201_28_15 13984 15318 + 4.A.3.2.6
CAZyme HRGMv2_4201_28 HRGMv2_4201_28_16 15323 16789 + GH1
TC HRGMv2_4201_28 HRGMv2_4201_28_17 16791 17102 + 4.A.3.2.5
Gene ID: HRGMv2_4201_28_11
Type: TC
Location: 8956 - 10290 (-)
Gene ID: HRGMv2_4201_28_12
Type: TF
Location: 10357 - 11169 (+)
Gene ID: HRGMv2_4201_28_13
Type: pfam
Location: 11189 - 12217 (-)
Gene ID: HRGMv2_4201_28_14
Type: TC
Location: 12301 - 13662 (+)
Gene ID: HRGMv2_4201_28_15
Type: TC
Location: 13984 - 15318 (+)
Gene ID: HRGMv2_4201_28_16
Type: CAZyme
Location: 15323 - 16789 (+)
Gene ID: HRGMv2_4201_28_17
Type: TC
Location: 16791 - 17102 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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