Cluster: HRGMv2_4201_CGC8
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4201
- CGC Family ID: CGCFAM_06073
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4201_24 | HRGMv2_4201_24_2 | 324 | 1829 | + | GH77 |
| TC | HRGMv2_4201_24 | HRGMv2_4201_24_3 | 1888 | 2463 | + | 3.D.1.8.1 |
| TF | HRGMv2_4201_24 | HRGMv2_4201_24_4 | 2480 | 2887 | - | MerR |
| TC | HRGMv2_4201_24 | HRGMv2_4201_24_5 | 3011 | 4696 | + | 3.A.1.106.12 |
| TC | HRGMv2_4201_24 | HRGMv2_4201_24_6 | 4698 | 6335 | + | 3.A.1.106.2 |
Gene ID: HRGMv2_4201_24_2
Type: CAZyme
Location: 324 - 1829 (+)
Type: CAZyme
Location: 324 - 1829 (+)
Gene ID: HRGMv2_4201_24_3
Type: TC
Location: 1888 - 2463 (+)
Type: TC
Location: 1888 - 2463 (+)
Gene ID: HRGMv2_4201_24_4
Type: TF
Location: 2480 - 2887 (-)
Type: TF
Location: 2480 - 2887 (-)
Gene ID: HRGMv2_4201_24_5
Type: TC
Location: 3011 - 4696 (+)
Type: TC
Location: 3011 - 4696 (+)
Gene ID: HRGMv2_4201_24_6
Type: TC
Location: 4698 - 6335 (+)
Type: TC
Location: 4698 - 6335 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.