Cluster: HRGMv2_4201_CGC5
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate: host glycan/beta-glucan
- Genome ID: HRGMv2_4201
- CGC Family ID: CGCFAM_00012
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4201_16 | HRGMv2_4201_16_10 | 8818 | 10050 | + | 4.A.3.2.3 |
| TC | HRGMv2_4201_16 | HRGMv2_4201_16_11 | 10052 | 10393 | + | 4.A.3.2.2 |
| CAZyme | HRGMv2_4201_16 | HRGMv2_4201_16_12 | 10396 | 11832 | + | GH1 |
| TC | HRGMv2_4201_16 | HRGMv2_4201_16_13 | 11816 | 12442 | + | 2.A.115.2.13 |
Gene ID: HRGMv2_4201_16_10
Type: TC
Location: 8818 - 10050 (+)
Type: TC
Location: 8818 - 10050 (+)
Gene ID: HRGMv2_4201_16_11
Type: TC
Location: 10052 - 10393 (+)
Type: TC
Location: 10052 - 10393 (+)
Gene ID: HRGMv2_4201_16_12
Type: CAZyme
Location: 10396 - 11832 (+)
Type: CAZyme
Location: 10396 - 11832 (+)
Gene ID: HRGMv2_4201_16_13
Type: TC
Location: 11816 - 12442 (+)
Type: TC
Location: 11816 - 12442 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.