Cluster: HRGMv2_4201_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4201
- CGC Family ID: CGCFAM_02890
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4201_8 | HRGMv2_4201_8_42 | 39989 | 40786 | - | GT8 |
| TC | HRGMv2_4201_8 | HRGMv2_4201_8_43 | 40853 | 41791 | - | 1.A.35.3.1 |
| pfam | HRGMv2_4201_8 | HRGMv2_4201_8_44 | 42321 | 42662 | - | DivIVA |
| pfam | HRGMv2_4201_8 | HRGMv2_4201_8_45 | 42910 | 43494 | + | RecU |
| CAZyme | HRGMv2_4201_8 | HRGMv2_4201_8_46 | 43494 | 45977 | + | GT51 |
Gene ID: HRGMv2_4201_8_42
Type: CAZyme
Location: 39989 - 40786 (-)
Type: CAZyme
Location: 39989 - 40786 (-)
Gene ID: HRGMv2_4201_8_43
Type: TC
Location: 40853 - 41791 (-)
Type: TC
Location: 40853 - 41791 (-)
Gene ID: HRGMv2_4201_8_44
Type: pfam
Location: 42321 - 42662 (-)
Type: pfam
Location: 42321 - 42662 (-)
Gene ID: HRGMv2_4201_8_45
Type: pfam
Location: 42910 - 43494 (+)
Type: pfam
Location: 42910 - 43494 (+)
Gene ID: HRGMv2_4201_8_46
Type: CAZyme
Location: 43494 - 45977 (+)
Type: CAZyme
Location: 43494 - 45977 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.