Cluster: HRGMv2_4201_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4201
- CGC Family ID: CGCFAM_09887
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4201_39 | HRGMv2_4201_39_3 | 1916 | 3256 | - | 1.A.26.1.3 |
| pfam | HRGMv2_4201_39 | HRGMv2_4201_39_4 | 3595 | 4362 | - | Ubie_methyltran | TehB | MetW | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31 |
| pfam | HRGMv2_4201_39 | HRGMv2_4201_39_5 | 4475 | 5614 | + | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | HRGMv2_4201_39 | HRGMv2_4201_39_6 | 5744 | 6646 | + | GH109 |
| CAZyme | HRGMv2_4201_39 | HRGMv2_4201_39_7 | 6630 | 7430 | + | GH25 |
Gene ID: HRGMv2_4201_39_3
Type: TC
Location: 1916 - 3256 (-)
Type: TC
Location: 1916 - 3256 (-)
Gene ID: HRGMv2_4201_39_4
Type: pfam
Location: 3595 - 4362 (-)
Type: pfam
Location: 3595 - 4362 (-)
Gene ID: HRGMv2_4201_39_5
Type: pfam
Location: 4475 - 5614 (+)
Type: pfam
Location: 4475 - 5614 (+)
Gene ID: HRGMv2_4201_39_6
Type: CAZyme
Location: 5744 - 6646 (+)
Type: CAZyme
Location: 5744 - 6646 (+)
Gene ID: HRGMv2_4201_39_7
Type: CAZyme
Location: 6630 - 7430 (+)
Type: CAZyme
Location: 6630 - 7430 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4201_39_3 | vegetarian > omnivore | 1.15656 | 0.01332 |