Cluster: HRGMv2_4201_CGC12
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4201
- CGC Family ID: CGCFAM_01247
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4201_36 | HRGMv2_4201_36_5 | 2165 | 3643 | - | GH1 |
| CAZyme | HRGMv2_4201_36 | HRGMv2_4201_36_6 | 3640 | 5103 | - | GH1 |
| TC | HRGMv2_4201_36 | HRGMv2_4201_36_7 | 5112 | 5600 | - | 4.A.1.2.5 |
| pfam | HRGMv2_4201_36 | HRGMv2_4201_36_8 | 5623 | 6471 | - | Hydrolase | S6PP | S6PP | Hydrolase_3 |
| TC | HRGMv2_4201_36 | HRGMv2_4201_36_9 | 6531 | 7922 | - | 4.A.1.2.11 |
| pfam | HRGMv2_4201_36 | HRGMv2_4201_36_10 | 7938 | 8783 | - | PRD | PRD | CAT_RBD |
| CAZyme | HRGMv2_4201_36 | HRGMv2_4201_36_11 | 8793 | 10256 | - | GH1 |
Gene ID: HRGMv2_4201_36_5
Type: CAZyme
Location: 2165 - 3643 (-)
Type: CAZyme
Location: 2165 - 3643 (-)
Gene ID: HRGMv2_4201_36_6
Type: CAZyme
Location: 3640 - 5103 (-)
Type: CAZyme
Location: 3640 - 5103 (-)
Gene ID: HRGMv2_4201_36_7
Type: TC
Location: 5112 - 5600 (-)
Type: TC
Location: 5112 - 5600 (-)
Gene ID: HRGMv2_4201_36_8
Type: pfam
Location: 5623 - 6471 (-)
Type: pfam
Location: 5623 - 6471 (-)
Gene ID: HRGMv2_4201_36_9
Type: TC
Location: 6531 - 7922 (-)
Type: TC
Location: 6531 - 7922 (-)
Gene ID: HRGMv2_4201_36_10
Type: pfam
Location: 7938 - 8783 (-)
Type: pfam
Location: 7938 - 8783 (-)
Gene ID: HRGMv2_4201_36_11
Type: CAZyme
Location: 8793 - 10256 (-)
Type: CAZyme
Location: 8793 - 10256 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.