Cluster: HRGMv2_4201_CGC10
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4201
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4201_29 | HRGMv2_4201_29_17 | 16887 | 18107 | + | 2.A.49.9.3 |
| pfam | HRGMv2_4201_29 | HRGMv2_4201_29_18 | 18220 | 19359 | + | NTP_transferase | Hexapep_GlmU |
| pfam | HRGMv2_4201_29 | HRGMv2_4201_29_19 | 19362 | 20477 | + | NTP_transferase | Hexapep_GlmU |
| CAZyme | HRGMv2_4201_29 | HRGMv2_4201_29_20 | 20477 | 21916 | + | GT5 |
| pfam | HRGMv2_4201_29 | HRGMv2_4201_29_21 | 21916 | 22341 | + | 2-thiour_desulf |
| TC | HRGMv2_4201_29 | HRGMv2_4201_29_22 | 22403 | 22669 | + | 8.A.8.1.3 |
Gene ID: HRGMv2_4201_29_17
Type: TC
Location: 16887 - 18107 (+)
Type: TC
Location: 16887 - 18107 (+)
Gene ID: HRGMv2_4201_29_18
Type: pfam
Location: 18220 - 19359 (+)
Type: pfam
Location: 18220 - 19359 (+)
Gene ID: HRGMv2_4201_29_19
Type: pfam
Location: 19362 - 20477 (+)
Type: pfam
Location: 19362 - 20477 (+)
Gene ID: HRGMv2_4201_29_20
Type: CAZyme
Location: 20477 - 21916 (+)
Type: CAZyme
Location: 20477 - 21916 (+)
Gene ID: HRGMv2_4201_29_21
Type: pfam
Location: 21916 - 22341 (+)
Type: pfam
Location: 21916 - 22341 (+)
Gene ID: HRGMv2_4201_29_22
Type: TC
Location: 22403 - 22669 (+)
Type: TC
Location: 22403 - 22669 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4201_29_22 | vegetarian > omnivore | 21.21473 | 0.01332 |