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Cluster: HRGMv2_4200_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4200_22 HRGMv2_4200_22_15 20909 22132 - GT4
CAZyme HRGMv2_4200_22 HRGMv2_4200_22_16 22143 23114 - GT2
NULL(UNKNOWN) HRGMv2_4200_22 HRGMv2_4200_22_17 23122 24984 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4200_22 HRGMv2_4200_22_18 24986 26278 - 3.A.1.103.6
TC HRGMv2_4200_22 HRGMv2_4200_22_19 26289 27089 - 3.A.1.104.1
pfam HRGMv2_4200_22 HRGMv2_4200_22_20 27111 27986 - Lactamase_B
CAZyme HRGMv2_4200_22 HRGMv2_4200_22_21 27986 28690 - GT2
pfam HRGMv2_4200_22 HRGMv2_4200_22_22 28687 29484 - Glycos_transf_2
CAZyme HRGMv2_4200_22 HRGMv2_4200_22_23 29503 30621 - GT4
pfam HRGMv2_4200_22 HRGMv2_4200_22_24 30614 31465 - 3Beta_HSD | Epimerase | RmlD_sub_bind | NAD_binding_4
TC HRGMv2_4200_22 HRGMv2_4200_22_25 31462 32052 - 9.B.18.1.2
TC HRGMv2_4200_22 HRGMv2_4200_22_26 32198 34063 - 9.B.18.2.1
CAZyme HRGMv2_4200_22 HRGMv2_4200_22_27 34298 36844 - GT2 | GT2
TC HRGMv2_4200_22 HRGMv2_4200_22_28 36857 37645 - 3.A.1.103.4
TC HRGMv2_4200_22 HRGMv2_4200_22_29 37657 38787 - 3.A.1.103.4
Gene ID: HRGMv2_4200_22_15
Type: CAZyme
Location: 20909 - 22132 (-)
Gene ID: HRGMv2_4200_22_16
Type: CAZyme
Location: 22143 - 23114 (-)
Gene ID: HRGMv2_4200_22_17
Type:
Location: 23122 - 24984 (-)
Gene ID: HRGMv2_4200_22_18
Type: TC
Location: 24986 - 26278 (-)
Gene ID: HRGMv2_4200_22_19
Type: TC
Location: 26289 - 27089 (-)
Gene ID: HRGMv2_4200_22_20
Type: pfam
Location: 27111 - 27986 (-)
Gene ID: HRGMv2_4200_22_21
Type: CAZyme
Location: 27986 - 28690 (-)
Gene ID: HRGMv2_4200_22_22
Type: pfam
Location: 28687 - 29484 (-)
Gene ID: HRGMv2_4200_22_23
Type: CAZyme
Location: 29503 - 30621 (-)
Gene ID: HRGMv2_4200_22_24
Type: pfam
Location: 30614 - 31465 (-)
Gene ID: HRGMv2_4200_22_25
Type: TC
Location: 31462 - 32052 (-)
Gene ID: HRGMv2_4200_22_26
Type: TC
Location: 32198 - 34063 (-)
Gene ID: HRGMv2_4200_22_27
Type: CAZyme
Location: 34298 - 36844 (-)
Gene ID: HRGMv2_4200_22_28
Type: TC
Location: 36857 - 37645 (-)
Gene ID: HRGMv2_4200_22_29
Type: TC
Location: 37657 - 38787 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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