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Cluster: HRGMv2_4192_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4192_7 HRGMv2_4192_7_1 178 1542 + 9.B.18.1.2
pfam HRGMv2_4192_7 HRGMv2_4192_7_2 1802 2971 + UDPG_MGDP_dh | NAD_Gly3P_dh_N | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
CAZyme HRGMv2_4192_7 HRGMv2_4192_7_3 2980 4167 + GT2
TC HRGMv2_4192_7 HRGMv2_4192_7_4 4425 5552 + 3.A.1.103.4
TC HRGMv2_4192_7 HRGMv2_4192_7_5 5557 6339 + 3.A.1.103.1
CAZyme HRGMv2_4192_7 HRGMv2_4192_7_6 6341 8500 + GT2 | GT2
CAZyme HRGMv2_4192_7 HRGMv2_4192_7_7 8500 10437 + GT2
NULL(UNKNOWN) HRGMv2_4192_7 HRGMv2_4192_7_8 10449 11123 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_4192_7 HRGMv2_4192_7_9 11116 12939 + DUF2142
CAZyme HRGMv2_4192_7 HRGMv2_4192_7_10 13715 14443 + GT2
pfam HRGMv2_4192_7 HRGMv2_4192_7_11 14433 14780 + DUF2304
NULL(UNKNOWN) HRGMv2_4192_7 HRGMv2_4192_7_12 14770 15990 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4192_7 HRGMv2_4192_7_13 16093 17073 + GT2
Gene ID: HRGMv2_4192_7_1
Type: TC
Location: 178 - 1542 (+)
Gene ID: HRGMv2_4192_7_2
Type: pfam
Location: 1802 - 2971 (+)
Gene ID: HRGMv2_4192_7_3
Type: CAZyme
Location: 2980 - 4167 (+)
Gene ID: HRGMv2_4192_7_4
Type: TC
Location: 4425 - 5552 (+)
Gene ID: HRGMv2_4192_7_5
Type: TC
Location: 5557 - 6339 (+)
Gene ID: HRGMv2_4192_7_6
Type: CAZyme
Location: 6341 - 8500 (+)
Gene ID: HRGMv2_4192_7_7
Type: CAZyme
Location: 8500 - 10437 (+)
Gene ID: HRGMv2_4192_7_8
Type:
Location: 10449 - 11123 (+)
Gene ID: HRGMv2_4192_7_9
Type: pfam
Location: 11116 - 12939 (+)
Gene ID: HRGMv2_4192_7_10
Type: CAZyme
Location: 13715 - 14443 (+)
Gene ID: HRGMv2_4192_7_11
Type: pfam
Location: 14433 - 14780 (+)
Gene ID: HRGMv2_4192_7_12
Type:
Location: 14770 - 15990 (+)
Gene ID: HRGMv2_4192_7_13
Type: CAZyme
Location: 16093 - 17073 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4192_7_1 vegan > omnivore 19.22122 0.00524
HRGMv2_4192_7_1 vegetarian > omnivore 17.72268 0.04420

🧭 Explore Read Mapping of CGC

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