Cluster: HRGMv2_4190_CGC43
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4190
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4190_288 | HRGMv2_4190_288_1 | 171 | 1538 | + | GH23 |
| pfam | HRGMv2_4190_288 | HRGMv2_4190_288_2 | 1608 | 2381 | - | Ubie_methyltran | Methyltransf_29 | Methyltransf_8 | MTS | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31 |
| pfam | HRGMv2_4190_288 | HRGMv2_4190_288_3 | 2451 | 3251 | - | Exo_endo_phos |
| TC | HRGMv2_4190_288 | HRGMv2_4190_288_4 | 3361 | 4554 | - | 2.A.1.2.65 |
Gene ID: HRGMv2_4190_288_1
Type: CAZyme
Location: 171 - 1538 (+)
Type: CAZyme
Location: 171 - 1538 (+)
Gene ID: HRGMv2_4190_288_2
Type: pfam
Location: 1608 - 2381 (-)
Type: pfam
Location: 1608 - 2381 (-)
Gene ID: HRGMv2_4190_288_3
Type: pfam
Location: 2451 - 3251 (-)
Type: pfam
Location: 2451 - 3251 (-)
Gene ID: HRGMv2_4190_288_4
Type: TC
Location: 3361 - 4554 (-)
Type: TC
Location: 3361 - 4554 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Shimwellia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.