Cluster: HRGMv2_4190_CGC42
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4190
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4190_272 | HRGMv2_4190_272_1 | 3 | 530 | - | 3.A.1.3.10 |
| TC | HRGMv2_4190_272 | HRGMv2_4190_272_2 | 527 | 1195 | - | 3.A.1.3.10 |
| STP | HRGMv2_4190_272 | HRGMv2_4190_272_3 | 1224 | 2204 | - | PALP |
| TC | HRGMv2_4190_272 | HRGMv2_4190_272_4 | 2327 | 3127 | - | 3.A.1.3.10 |
| CAZyme | HRGMv2_4190_272 | HRGMv2_4190_272_5 | 3346 | 4839 | + | GH13_5 |
Gene ID: HRGMv2_4190_272_1
Type: TC
Location: 3 - 530 (-)
Type: TC
Location: 3 - 530 (-)
Gene ID: HRGMv2_4190_272_2
Type: TC
Location: 527 - 1195 (-)
Type: TC
Location: 527 - 1195 (-)
Gene ID: HRGMv2_4190_272_3
Type: STP
Location: 1224 - 2204 (-)
Type: STP
Location: 1224 - 2204 (-)
Gene ID: HRGMv2_4190_272_4
Type: TC
Location: 2327 - 3127 (-)
Type: TC
Location: 2327 - 3127 (-)
Gene ID: HRGMv2_4190_272_5
Type: CAZyme
Location: 3346 - 4839 (+)
Type: CAZyme
Location: 3346 - 4839 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Shimwellia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.