dbCAN Logo

Cluster: HRGMv2_4190_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4190_86 HRGMv2_4190_86_2 1017 2006 + 3.A.1.2.2
TC HRGMv2_4190_86 HRGMv2_4190_86_3 2063 3598 + 3.A.1.2.2
TC HRGMv2_4190_86 HRGMv2_4190_86_4 3624 4604 + 3.A.1.2.2
pfam HRGMv2_4190_86 HRGMv2_4190_86_5 4940 5746 + Trehalose_PPase
CAZyme HRGMv2_4190_86 HRGMv2_4190_86_6 5721 7145 + GT20
pfam HRGMv2_4190_86 HRGMv2_4190_86_7 7190 7612 - Usp
TC HRGMv2_4190_86 HRGMv2_4190_86_8 7886 9415 - 3.A.23.1.1
pfam HRGMv2_4190_86 HRGMv2_4190_86_9 9533 10360 - NAD_synthase
pfam HRGMv2_4190_86 HRGMv2_4190_86_10 10606 10944 + BamE
TC HRGMv2_4190_86 HRGMv2_4190_86_11 11447 12838 - 2.A.23.1.8
Gene ID: HRGMv2_4190_86_2
Type: TC
Location: 1017 - 2006 (+)
Gene ID: HRGMv2_4190_86_3
Type: TC
Location: 2063 - 3598 (+)
Gene ID: HRGMv2_4190_86_4
Type: TC
Location: 3624 - 4604 (+)
Gene ID: HRGMv2_4190_86_5
Type: pfam
Location: 4940 - 5746 (+)
Gene ID: HRGMv2_4190_86_6
Type: CAZyme
Location: 5721 - 7145 (+)
Gene ID: HRGMv2_4190_86_7
Type: pfam
Location: 7190 - 7612 (-)
Gene ID: HRGMv2_4190_86_8
Type: TC
Location: 7886 - 9415 (-)
Gene ID: HRGMv2_4190_86_9
Type: pfam
Location: 9533 - 10360 (-)
Gene ID: HRGMv2_4190_86_10
Type: pfam
Location: 10606 - 10944 (+)
Gene ID: HRGMv2_4190_86_11
Type: TC
Location: 11447 - 12838 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List