dbCAN Logo

Cluster: HRGMv2_4190_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4190_83 HRGMv2_4190_83_1 2 214 + 3.A.1.120.6
CAZyme HRGMv2_4190_83 HRGMv2_4190_83_2 360 2723 - GH31_2
TC HRGMv2_4190_83 HRGMv2_4190_83_3 2738 4039 - 2.A.1.14.2
TF HRGMv2_4190_83 HRGMv2_4190_83_4 4342 5412 + LacI
TC HRGMv2_4190_83 HRGMv2_4190_83_5 5409 6170 - 3.A.25.2.1
pfam HRGMv2_4190_83 HRGMv2_4190_83_6 6172 7404 - MoCF_biosynth | MoeA_N | MoeA_C
peptidase HRGMv2_4190_83 HRGMv2_4190_83_7 7632 8573 + T02.UPW
TC HRGMv2_4190_83 HRGMv2_4190_83_8 8583 10445 + 3.A.1.5.11
TC HRGMv2_4190_83 HRGMv2_4190_83_9 10547 12091 + 3.A.1.5.11
TC HRGMv2_4190_83 HRGMv2_4190_83_10 12139 13059 + 3.A.1.5.11
TC HRGMv2_4190_83 HRGMv2_4190_83_11 13061 13972 + 3.A.1.5.11
Gene ID: HRGMv2_4190_83_1
Type: TC
Location: 2 - 214 (+)
Gene ID: HRGMv2_4190_83_2
Type: CAZyme
Location: 360 - 2723 (-)
Gene ID: HRGMv2_4190_83_3
Type: TC
Location: 2738 - 4039 (-)
Gene ID: HRGMv2_4190_83_4
Type: TF
Location: 4342 - 5412 (+)
Gene ID: HRGMv2_4190_83_5
Type: TC
Location: 5409 - 6170 (-)
Gene ID: HRGMv2_4190_83_6
Type: pfam
Location: 6172 - 7404 (-)
Gene ID: HRGMv2_4190_83_7
Type: peptidase
Location: 7632 - 8573 (+)
Gene ID: HRGMv2_4190_83_8
Type: TC
Location: 8583 - 10445 (+)
Gene ID: HRGMv2_4190_83_9
Type: TC
Location: 10547 - 12091 (+)
Gene ID: HRGMv2_4190_83_10
Type: TC
Location: 12139 - 13059 (+)
Gene ID: HRGMv2_4190_83_11
Type: TC
Location: 13061 - 13972 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List