Cluster: HRGMv2_4189_CGC48
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4189
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4189_19 | HRGMv2_4189_19_16 | 18295 | 19041 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_4189_19 | HRGMv2_4189_19_17 | 19050 | 20273 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4189_19 | HRGMv2_4189_19_18 | 20248 | 21465 | - | GT4 |
| pfam | HRGMv2_4189_19 | HRGMv2_4189_19_19 | 21462 | 21953 | - | Hexapep |
| CAZyme | HRGMv2_4189_19 | HRGMv2_4189_19_20 | 21953 | 22795 | - | GT2 |
| TC | HRGMv2_4189_19 | HRGMv2_4189_19_21 | 22920 | 25082 | - | 8.A.3.3.2 |
| pfam | HRGMv2_4189_19 | HRGMv2_4189_19_22 | 25085 | 25528 | - | LMWPc |
| TC | HRGMv2_4189_19 | HRGMv2_4189_19_23 | 25534 | 26583 | - | 1.B.18.3.1 |
| TC | HRGMv2_4189_19 | HRGMv2_4189_19_24 | 27311 | 28891 | + | 2.A.109.2.3 |
| TC | HRGMv2_4189_19 | HRGMv2_4189_19_25 | 28933 | 30777 | - | 9.B.22.2.1 |
| pfam | HRGMv2_4189_19 | HRGMv2_4189_19_26 | 30804 | 31385 | - | DCD_N | DCD |
| pfam | HRGMv2_4189_19 | HRGMv2_4189_19_27 | 31463 | 32104 | - | PRK |
| TC | HRGMv2_4189_19 | HRGMv2_4189_19_28 | 32391 | 34730 | + | 9.B.34.1.1 |
Gene ID: HRGMv2_4189_19_16
Type: CAZyme
Location: 18295 - 19041 (-)
Type: CAZyme
Location: 18295 - 19041 (-)
Gene ID: HRGMv2_4189_19_17
Type:
Location: 19050 - 20273 (-)
Type:
Location: 19050 - 20273 (-)
Gene ID: HRGMv2_4189_19_18
Type: CAZyme
Location: 20248 - 21465 (-)
Type: CAZyme
Location: 20248 - 21465 (-)
Gene ID: HRGMv2_4189_19_19
Type: pfam
Location: 21462 - 21953 (-)
Type: pfam
Location: 21462 - 21953 (-)
Gene ID: HRGMv2_4189_19_20
Type: CAZyme
Location: 21953 - 22795 (-)
Type: CAZyme
Location: 21953 - 22795 (-)
Gene ID: HRGMv2_4189_19_21
Type: TC
Location: 22920 - 25082 (-)
Type: TC
Location: 22920 - 25082 (-)
Gene ID: HRGMv2_4189_19_22
Type: pfam
Location: 25085 - 25528 (-)
Type: pfam
Location: 25085 - 25528 (-)
Gene ID: HRGMv2_4189_19_23
Type: TC
Location: 25534 - 26583 (-)
Type: TC
Location: 25534 - 26583 (-)
Gene ID: HRGMv2_4189_19_24
Type: TC
Location: 27311 - 28891 (+)
Type: TC
Location: 27311 - 28891 (+)
Gene ID: HRGMv2_4189_19_25
Type: TC
Location: 28933 - 30777 (-)
Type: TC
Location: 28933 - 30777 (-)
Gene ID: HRGMv2_4189_19_26
Type: pfam
Location: 30804 - 31385 (-)
Type: pfam
Location: 30804 - 31385 (-)
Gene ID: HRGMv2_4189_19_27
Type: pfam
Location: 31463 - 32104 (-)
Type: pfam
Location: 31463 - 32104 (-)
Gene ID: HRGMv2_4189_19_28
Type: TC
Location: 32391 - 34730 (+)
Type: TC
Location: 32391 - 34730 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Kluyvera
Species
Kluyvera georgiana
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.