Cluster: HRGMv2_4189_CGC1
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4189
- CGC Family ID: CGCFAM_04023
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4189_1 | HRGMv2_4189_1_4 | 3464 | 5161 | + | 9.B.33.1.1 |
| TF | HRGMv2_4189_1 | HRGMv2_4189_1_5 | 5174 | 5911 | + | LytTR |
| STP | HRGMv2_4189_1 | HRGMv2_4189_1_6 | 5969 | 6934 | - | Glucokinase |
| TC | HRGMv2_4189_1 | HRGMv2_4189_1_7 | 7180 | 8418 | + | 2.A.49.7.1 |
| pfam | HRGMv2_4189_1 | HRGMv2_4189_1_8 | 8415 | 10073 | - | TPP_enzyme_M | TPP_enzyme_C | TPP_enzyme_N |
| NULL(UNKNOWN) | HRGMv2_4189_1 | HRGMv2_4189_1_9 | 10075 | 10212 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4189_1 | HRGMv2_4189_1_10 | 10246 | 11244 | + | 8.A.5.1.3 |
| pfam | HRGMv2_4189_1 | HRGMv2_4189_1_11 | 11370 | 11687 | + | DUF2502 |
| TC | HRGMv2_4189_1 | HRGMv2_4189_1_12 | 11849 | 13408 | + | 4.A.1.1.3 |
| pfam | HRGMv2_4189_1 | HRGMv2_4189_1_13 | 13426 | 14778 | + | Lyase_1 | ADSL_C |
| CAZyme | HRGMv2_4189_1 | HRGMv2_4189_1_14 | 14768 | 15982 | + | CE9 |
| NULL(UNKNOWN) | HRGMv2_4189_1 | HRGMv2_4189_1_15 | 15975 | 17522 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4189_1 | HRGMv2_4189_1_16 | 17613 | 18848 | - | 2.A.55.3.1 |
| TC | HRGMv2_4189_1 | HRGMv2_4189_1_17 | 19184 | 20386 | + | 2.A.41.1.1 |
Gene ID: HRGMv2_4189_1_4
Type: TC
Location: 3464 - 5161 (+)
Type: TC
Location: 3464 - 5161 (+)
Gene ID: HRGMv2_4189_1_5
Type: TF
Location: 5174 - 5911 (+)
Type: TF
Location: 5174 - 5911 (+)
Gene ID: HRGMv2_4189_1_6
Type: STP
Location: 5969 - 6934 (-)
Type: STP
Location: 5969 - 6934 (-)
Gene ID: HRGMv2_4189_1_7
Type: TC
Location: 7180 - 8418 (+)
Type: TC
Location: 7180 - 8418 (+)
Gene ID: HRGMv2_4189_1_8
Type: pfam
Location: 8415 - 10073 (-)
Type: pfam
Location: 8415 - 10073 (-)
Gene ID: HRGMv2_4189_1_9
Type:
Location: 10075 - 10212 (+)
Type:
Location: 10075 - 10212 (+)
Gene ID: HRGMv2_4189_1_10
Type: TC
Location: 10246 - 11244 (+)
Type: TC
Location: 10246 - 11244 (+)
Gene ID: HRGMv2_4189_1_11
Type: pfam
Location: 11370 - 11687 (+)
Type: pfam
Location: 11370 - 11687 (+)
Gene ID: HRGMv2_4189_1_12
Type: TC
Location: 11849 - 13408 (+)
Type: TC
Location: 11849 - 13408 (+)
Gene ID: HRGMv2_4189_1_13
Type: pfam
Location: 13426 - 14778 (+)
Type: pfam
Location: 13426 - 14778 (+)
Gene ID: HRGMv2_4189_1_14
Type: CAZyme
Location: 14768 - 15982 (+)
Type: CAZyme
Location: 14768 - 15982 (+)
Gene ID: HRGMv2_4189_1_15
Type:
Location: 15975 - 17522 (-)
Type:
Location: 15975 - 17522 (-)
Gene ID: HRGMv2_4189_1_16
Type: TC
Location: 17613 - 18848 (-)
Type: TC
Location: 17613 - 18848 (-)
Gene ID: HRGMv2_4189_1_17
Type: TC
Location: 19184 - 20386 (+)
Type: TC
Location: 19184 - 20386 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Kluyvera
Species
Kluyvera georgiana
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.