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Cluster: HRGMv2_4186_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4186_20 HRGMv2_4186_20_1 2 577 + 5.A.3.7.1
TC HRGMv2_4186_20 HRGMv2_4186_20_2 677 1960 + 1.I.1.1.3
TF HRGMv2_4186_20 HRGMv2_4186_20_3 2138 3040 + HTH_1
TC HRGMv2_4186_20 HRGMv2_4186_20_4 3375 4028 + 2.A.102.2.7
pfam HRGMv2_4186_20 HRGMv2_4186_20_5 4033 6237 - Cytochrom_C | Cytochrom_C | Cytochrom_C | Cytochrome_CBB3 | Cytochrome_CBB3 | Cytochrome_CBB3 | FixP_N
TC HRGMv2_4186_20 HRGMv2_4186_20_6 6248 6847 - 3.D.4.3.3
TC HRGMv2_4186_20 HRGMv2_4186_20_7 6849 8261 - 3.D.4.3.3
pfam HRGMv2_4186_20 HRGMv2_4186_20_8 8297 8620 - Cytochrom_C
CAZyme HRGMv2_4186_20 HRGMv2_4186_20_9 8903 10591 + CBM5 | CBM5 | GH19
TC HRGMv2_4186_20 HRGMv2_4186_20_10 10671 12269 - 9.B.34.1.1
CAZyme HRGMv2_4186_20 HRGMv2_4186_20_11 12517 13920 + GH1
Gene ID: HRGMv2_4186_20_1
Type: TC
Location: 2 - 577 (+)
Gene ID: HRGMv2_4186_20_2
Type: TC
Location: 677 - 1960 (+)
Gene ID: HRGMv2_4186_20_3
Type: TF
Location: 2138 - 3040 (+)
Gene ID: HRGMv2_4186_20_4
Type: TC
Location: 3375 - 4028 (+)
Gene ID: HRGMv2_4186_20_5
Type: pfam
Location: 4033 - 6237 (-)
Gene ID: HRGMv2_4186_20_6
Type: TC
Location: 6248 - 6847 (-)
Gene ID: HRGMv2_4186_20_7
Type: TC
Location: 6849 - 8261 (-)
Gene ID: HRGMv2_4186_20_8
Type: pfam
Location: 8297 - 8620 (-)
Gene ID: HRGMv2_4186_20_9
Type: CAZyme
Location: 8903 - 10591 (+)
Gene ID: HRGMv2_4186_20_10
Type: TC
Location: 10671 - 12269 (-)
Gene ID: HRGMv2_4186_20_11
Type: CAZyme
Location: 12517 - 13920 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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