Cluster: HRGMv2_4186_CGC7
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4186
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4186_16 | HRGMv2_4186_16_20 | 15084 | 16088 | - | GH3 |
| pfam | HRGMv2_4186_16 | HRGMv2_4186_16_21 | 16301 | 17071 | + | DUF4344 |
| pfam | HRGMv2_4186_16 | HRGMv2_4186_16_22 | 17227 | 17709 | + | DUF1097 |
| TC | HRGMv2_4186_16 | HRGMv2_4186_16_23 | 18108 | 18461 | + | 2.A.6.2.46 |
| TC | HRGMv2_4186_16 | HRGMv2_4186_16_24 | 18403 | 18837 | + | 2.A.6.2.22 |
Gene ID: HRGMv2_4186_16_20
Type: CAZyme
Location: 15084 - 16088 (-)
Type: CAZyme
Location: 15084 - 16088 (-)
Gene ID: HRGMv2_4186_16_21
Type: pfam
Location: 16301 - 17071 (+)
Type: pfam
Location: 16301 - 17071 (+)
Gene ID: HRGMv2_4186_16_22
Type: pfam
Location: 17227 - 17709 (+)
Type: pfam
Location: 17227 - 17709 (+)
Gene ID: HRGMv2_4186_16_23
Type: TC
Location: 18108 - 18461 (+)
Type: TC
Location: 18108 - 18461 (+)
Gene ID: HRGMv2_4186_16_24
Type: TC
Location: 18403 - 18837 (+)
Type: TC
Location: 18403 - 18837 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Vibrionaceae
Genus
Photobacterium
Species
Photobacterium damselae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.