Cluster: HRGMv2_4186_CGC4
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4186
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4186_14 | HRGMv2_4186_14_9 | 10556 | 12460 | + | 4.A.2.1.6 |
| pfam | HRGMv2_4186_14 | HRGMv2_4186_14_10 | 12704 | 13792 | + | Chorismate_synt |
| TC | HRGMv2_4186_14 | HRGMv2_4186_14_11 | 13894 | 14595 | - | 1.A.62.2.3 |
| pfam | HRGMv2_4186_14 | HRGMv2_4186_14_12 | 14846 | 15397 | + | EpmC |
| pfam | HRGMv2_4186_14 | HRGMv2_4186_14_13 | 15420 | 15680 | + | YfcL |
| CAZyme | HRGMv2_4186_14 | HRGMv2_4186_14_14 | 15770 | 16825 | + | GT4 |
| CAZyme | HRGMv2_4186_14 | HRGMv2_4186_14_15 | 16818 | 19052 | + | GT4 | GT4 |
| pfam | HRGMv2_4186_14 | HRGMv2_4186_14_16 | 19045 | 19824 | + | ABC2_membrane |
| TC | HRGMv2_4186_14 | HRGMv2_4186_14_17 | 19827 | 20573 | + | 3.A.1.103.4 |
| CAZyme | HRGMv2_4186_14 | HRGMv2_4186_14_18 | 20612 | 21742 | + | GT4 |
| TC | HRGMv2_4186_14 | HRGMv2_4186_14_19 | 22044 | 23909 | - | 9.B.18.2.1 |
| pfam | HRGMv2_4186_14 | HRGMv2_4186_14_20 | 24040 | 24981 | + | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd |
| TC | HRGMv2_4186_14 | HRGMv2_4186_14_21 | 24990 | 25541 | + | 9.B.18.1.3 |
| NULL(UNKNOWN) | HRGMv2_4186_14 | HRGMv2_4186_14_22 | 25496 | 25666 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4186_14 | HRGMv2_4186_14_23 | 25762 | 26724 | - | 1.B.6.1.12 |
| TC | HRGMv2_4186_14 | HRGMv2_4186_14_24 | 27095 | 29308 | - | 1.B.14.16.8 |
Gene ID: HRGMv2_4186_14_9
Type: TC
Location: 10556 - 12460 (+)
Type: TC
Location: 10556 - 12460 (+)
Gene ID: HRGMv2_4186_14_10
Type: pfam
Location: 12704 - 13792 (+)
Type: pfam
Location: 12704 - 13792 (+)
Gene ID: HRGMv2_4186_14_11
Type: TC
Location: 13894 - 14595 (-)
Type: TC
Location: 13894 - 14595 (-)
Gene ID: HRGMv2_4186_14_12
Type: pfam
Location: 14846 - 15397 (+)
Type: pfam
Location: 14846 - 15397 (+)
Gene ID: HRGMv2_4186_14_13
Type: pfam
Location: 15420 - 15680 (+)
Type: pfam
Location: 15420 - 15680 (+)
Gene ID: HRGMv2_4186_14_14
Type: CAZyme
Location: 15770 - 16825 (+)
Type: CAZyme
Location: 15770 - 16825 (+)
Gene ID: HRGMv2_4186_14_15
Type: CAZyme
Location: 16818 - 19052 (+)
Type: CAZyme
Location: 16818 - 19052 (+)
Gene ID: HRGMv2_4186_14_16
Type: pfam
Location: 19045 - 19824 (+)
Type: pfam
Location: 19045 - 19824 (+)
Gene ID: HRGMv2_4186_14_17
Type: TC
Location: 19827 - 20573 (+)
Type: TC
Location: 19827 - 20573 (+)
Gene ID: HRGMv2_4186_14_18
Type: CAZyme
Location: 20612 - 21742 (+)
Type: CAZyme
Location: 20612 - 21742 (+)
Gene ID: HRGMv2_4186_14_19
Type: TC
Location: 22044 - 23909 (-)
Type: TC
Location: 22044 - 23909 (-)
Gene ID: HRGMv2_4186_14_20
Type: pfam
Location: 24040 - 24981 (+)
Type: pfam
Location: 24040 - 24981 (+)
Gene ID: HRGMv2_4186_14_21
Type: TC
Location: 24990 - 25541 (+)
Type: TC
Location: 24990 - 25541 (+)
Gene ID: HRGMv2_4186_14_22
Type:
Location: 25496 - 25666 (-)
Type:
Location: 25496 - 25666 (-)
Gene ID: HRGMv2_4186_14_23
Type: TC
Location: 25762 - 26724 (-)
Type: TC
Location: 25762 - 26724 (-)
Gene ID: HRGMv2_4186_14_24
Type: TC
Location: 27095 - 29308 (-)
Type: TC
Location: 27095 - 29308 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Vibrionaceae
Genus
Photobacterium
Species
Photobacterium damselae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.