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Cluster: HRGMv2_4186_CGC32

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4186_67 HRGMv2_4186_67_28 30431 31453 - 3.A.1.5.14
TC HRGMv2_4186_67 HRGMv2_4186_67_29 31456 32442 - 3.A.1.5.16
TC HRGMv2_4186_67 HRGMv2_4186_67_30 32532 34199 - 3.A.1.5.6
CAZyme HRGMv2_4186_67 HRGMv2_4186_67_31 34448 36952 - GH2
TF HRGMv2_4186_67 HRGMv2_4186_67_32 37181 38023 - HTH_AraC
TC HRGMv2_4186_67 HRGMv2_4186_67_33 38331 38645 - 4.A.2.1.10
TC HRGMv2_4186_67 HRGMv2_4186_67_34 38680 39738 - 4.A.2.1.10
NULL(UNKNOWN) HRGMv2_4186_67 HRGMv2_4186_67_35 40473 40853 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_4186_67 HRGMv2_4186_67_36 41065 41655 + N_methyl
TC HRGMv2_4186_67 HRGMv2_4186_67_37 41810 43165 + 9.B.34.1.2
TC HRGMv2_4186_67 HRGMv2_4186_67_38 43172 44203 - 3.A.1.11.1
Gene ID: HRGMv2_4186_67_28
Type: TC
Location: 30431 - 31453 (-)
Gene ID: HRGMv2_4186_67_29
Type: TC
Location: 31456 - 32442 (-)
Gene ID: HRGMv2_4186_67_30
Type: TC
Location: 32532 - 34199 (-)
Gene ID: HRGMv2_4186_67_31
Type: CAZyme
Location: 34448 - 36952 (-)
Gene ID: HRGMv2_4186_67_32
Type: TF
Location: 37181 - 38023 (-)
Gene ID: HRGMv2_4186_67_33
Type: TC
Location: 38331 - 38645 (-)
Gene ID: HRGMv2_4186_67_34
Type: TC
Location: 38680 - 39738 (-)
Gene ID: HRGMv2_4186_67_35
Type:
Location: 40473 - 40853 (+)
Gene ID: HRGMv2_4186_67_36
Type: pfam
Location: 41065 - 41655 (+)
Gene ID: HRGMv2_4186_67_37
Type: TC
Location: 41810 - 43165 (+)
Gene ID: HRGMv2_4186_67_38
Type: TC
Location: 43172 - 44203 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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