Cluster: HRGMv2_4186_CGC31
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4186
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4186_63 | HRGMv2_4186_63_16 | 17196 | 17939 | - | 3.A.1.3.14 |
| pfam | HRGMv2_4186_63 | HRGMv2_4186_63_17 | 17942 | 19420 | - | SUFBD_core | SufBD_N |
| pfam | HRGMv2_4186_63 | HRGMv2_4186_63_18 | 19424 | 19792 | - | Fe-S_biosyn |
| TC | HRGMv2_4186_63 | HRGMv2_4186_63_19 | 20159 | 21049 | - | 3.A.1.1.1 |
| TC | HRGMv2_4186_63 | HRGMv2_4186_63_20 | 21061 | 22656 | - | 3.A.1.1.1 |
| TC | HRGMv2_4186_63 | HRGMv2_4186_63_21 | 22726 | 23907 | - | 3.A.1.1.1 |
| TC | HRGMv2_4186_63 | HRGMv2_4186_63_22 | 24336 | 25442 | + | 3.A.1.1.1 |
| NULL(UNKNOWN) | HRGMv2_4186_63 | HRGMv2_4186_63_23 | 25719 | 25898 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4186_63 | HRGMv2_4186_63_24 | 26523 | 27773 | + | 1.B.3.1.1 |
| pfam | HRGMv2_4186_63 | HRGMv2_4186_63_25 | 27876 | 28691 | + | MalM |
| CAZyme | HRGMv2_4186_63 | HRGMv2_4186_63_26 | 28800 | 30518 | - | GH36 |
| CAZyme | HRGMv2_4186_63 | HRGMv2_4186_63_27 | 30717 | 32825 | - | GH13_13 |
| pfam | HRGMv2_4186_63 | HRGMv2_4186_63_28 | 32786 | 33046 | - | CBM_48 | Pullulanase_N2 |
| pfam | HRGMv2_4186_63 | HRGMv2_4186_63_29 | 33077 | 33424 | - | Pullulanase_N2 |
| CAZyme | HRGMv2_4186_63 | HRGMv2_4186_63_30 | 33751 | 35268 | - | GT5 |
Gene ID: HRGMv2_4186_63_16
Type: TC
Location: 17196 - 17939 (-)
Type: TC
Location: 17196 - 17939 (-)
Gene ID: HRGMv2_4186_63_17
Type: pfam
Location: 17942 - 19420 (-)
Type: pfam
Location: 17942 - 19420 (-)
Gene ID: HRGMv2_4186_63_18
Type: pfam
Location: 19424 - 19792 (-)
Type: pfam
Location: 19424 - 19792 (-)
Gene ID: HRGMv2_4186_63_19
Type: TC
Location: 20159 - 21049 (-)
Type: TC
Location: 20159 - 21049 (-)
Gene ID: HRGMv2_4186_63_20
Type: TC
Location: 21061 - 22656 (-)
Type: TC
Location: 21061 - 22656 (-)
Gene ID: HRGMv2_4186_63_21
Type: TC
Location: 22726 - 23907 (-)
Type: TC
Location: 22726 - 23907 (-)
Gene ID: HRGMv2_4186_63_22
Type: TC
Location: 24336 - 25442 (+)
Type: TC
Location: 24336 - 25442 (+)
Gene ID: HRGMv2_4186_63_23
Type:
Location: 25719 - 25898 (+)
Type:
Location: 25719 - 25898 (+)
Gene ID: HRGMv2_4186_63_24
Type: TC
Location: 26523 - 27773 (+)
Type: TC
Location: 26523 - 27773 (+)
Gene ID: HRGMv2_4186_63_25
Type: pfam
Location: 27876 - 28691 (+)
Type: pfam
Location: 27876 - 28691 (+)
Gene ID: HRGMv2_4186_63_26
Type: CAZyme
Location: 28800 - 30518 (-)
Type: CAZyme
Location: 28800 - 30518 (-)
Gene ID: HRGMv2_4186_63_27
Type: CAZyme
Location: 30717 - 32825 (-)
Type: CAZyme
Location: 30717 - 32825 (-)
Gene ID: HRGMv2_4186_63_28
Type: pfam
Location: 32786 - 33046 (-)
Type: pfam
Location: 32786 - 33046 (-)
Gene ID: HRGMv2_4186_63_29
Type: pfam
Location: 33077 - 33424 (-)
Type: pfam
Location: 33077 - 33424 (-)
Gene ID: HRGMv2_4186_63_30
Type: CAZyme
Location: 33751 - 35268 (-)
Type: CAZyme
Location: 33751 - 35268 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Vibrionaceae
Genus
Photobacterium
Species
Photobacterium damselae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.