Cluster: HRGMv2_4186_CGC27
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4186
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4186_55 | HRGMv2_4186_55_24 | 30693 | 32879 | + | AA2 |
| pfam | HRGMv2_4186_55 | HRGMv2_4186_55_25 | 33084 | 33428 | - | GreA_GreB |
| NULL(UNKNOWN) | HRGMv2_4186_55 | HRGMv2_4186_55_26 | 33858 | 34739 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4186_55 | HRGMv2_4186_55_27 | 34847 | 36226 | - | 2.A.61.1.2 |
| pfam | HRGMv2_4186_55 | HRGMv2_4186_55_28 | 36579 | 36812 | - | Glutaredoxin | GST_N_3 |
| TC | HRGMv2_4186_55 | HRGMv2_4186_55_29 | 37162 | 39606 | + | 3.A.17.1.1 |
Gene ID: HRGMv2_4186_55_24
Type: CAZyme
Location: 30693 - 32879 (+)
Type: CAZyme
Location: 30693 - 32879 (+)
Gene ID: HRGMv2_4186_55_25
Type: pfam
Location: 33084 - 33428 (-)
Type: pfam
Location: 33084 - 33428 (-)
Gene ID: HRGMv2_4186_55_26
Type:
Location: 33858 - 34739 (+)
Type:
Location: 33858 - 34739 (+)
Gene ID: HRGMv2_4186_55_27
Type: TC
Location: 34847 - 36226 (-)
Type: TC
Location: 34847 - 36226 (-)
Gene ID: HRGMv2_4186_55_28
Type: pfam
Location: 36579 - 36812 (-)
Type: pfam
Location: 36579 - 36812 (-)
Gene ID: HRGMv2_4186_55_29
Type: TC
Location: 37162 - 39606 (+)
Type: TC
Location: 37162 - 39606 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Vibrionaceae
Genus
Photobacterium
Species
Photobacterium damselae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.