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Cluster: HRGMv2_4186_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4186_49 HRGMv2_4186_49_18 17514 18881 - 3.A.5.1.1
TC HRGMv2_4186_49 HRGMv2_4186_49_19 19083 19880 + 9.B.14.3.6
TC HRGMv2_4186_49 HRGMv2_4186_49_20 19923 21200 + 9.A.40.2.4
pfam HRGMv2_4186_49 HRGMv2_4186_49_21 21304 21819 - LuxS
CAZyme HRGMv2_4186_49 HRGMv2_4186_49_22 21858 22469 - GH23
pfam HRGMv2_4186_49 HRGMv2_4186_49_23 22593 24158 - Glu_cys_ligase
peptidase HRGMv2_4186_49 HRGMv2_4186_49_24 24313 27159 - M16.UPB
TC HRGMv2_4186_49 HRGMv2_4186_49_25 27172 27618 - 9.B.27.3.1
Gene ID: HRGMv2_4186_49_18
Type: TC
Location: 17514 - 18881 (-)
Gene ID: HRGMv2_4186_49_19
Type: TC
Location: 19083 - 19880 (+)
Gene ID: HRGMv2_4186_49_20
Type: TC
Location: 19923 - 21200 (+)
Gene ID: HRGMv2_4186_49_21
Type: pfam
Location: 21304 - 21819 (-)
Gene ID: HRGMv2_4186_49_22
Type: CAZyme
Location: 21858 - 22469 (-)
Gene ID: HRGMv2_4186_49_23
Type: pfam
Location: 22593 - 24158 (-)
Gene ID: HRGMv2_4186_49_24
Type: peptidase
Location: 24313 - 27159 (-)
Gene ID: HRGMv2_4186_49_25
Type: TC
Location: 27172 - 27618 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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