Cluster: HRGMv2_4186_CGC18
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4186
- CGC Family ID: CGCFAM_02021
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4186_40 | HRGMv2_4186_40_73 | 77113 | 77898 | - | 3.A.1.15.5 |
| TC | HRGMv2_4186_40 | HRGMv2_4186_40_74 | 77910 | 78659 | - | 3.A.1.15.5 |
| TC | HRGMv2_4186_40 | HRGMv2_4186_40_75 | 78756 | 79691 | + | 3.A.1.15.5 |
| CAZyme | HRGMv2_4186_40 | HRGMv2_4186_40_76 | 79694 | 81043 | + | CBM50 |
| STP | HRGMv2_4186_40 | HRGMv2_4186_40_77 | 81259 | 81486 | + | FeoA |
| TC | HRGMv2_4186_40 | HRGMv2_4186_40_78 | 81486 | 83762 | + | 9.A.8.1.12 |
Gene ID: HRGMv2_4186_40_73
Type: TC
Location: 77113 - 77898 (-)
Type: TC
Location: 77113 - 77898 (-)
Gene ID: HRGMv2_4186_40_74
Type: TC
Location: 77910 - 78659 (-)
Type: TC
Location: 77910 - 78659 (-)
Gene ID: HRGMv2_4186_40_75
Type: TC
Location: 78756 - 79691 (+)
Type: TC
Location: 78756 - 79691 (+)
Gene ID: HRGMv2_4186_40_76
Type: CAZyme
Location: 79694 - 81043 (+)
Type: CAZyme
Location: 79694 - 81043 (+)
Gene ID: HRGMv2_4186_40_77
Type: STP
Location: 81259 - 81486 (+)
Type: STP
Location: 81259 - 81486 (+)
Gene ID: HRGMv2_4186_40_78
Type: TC
Location: 81486 - 83762 (+)
Type: TC
Location: 81486 - 83762 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Vibrionaceae
Genus
Photobacterium
Species
Photobacterium damselae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.