Cluster: HRGMv2_4186_CGC13
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_4186
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4186_31 | HRGMv2_4186_31_119 | 128434 | 130854 | - | PL8 |
| TC | HRGMv2_4186_31 | HRGMv2_4186_31_120 | 131512 | 132243 | + | 4.B.1.1.1 |
| pfam | HRGMv2_4186_31 | HRGMv2_4186_31_121 | 132240 | 132977 | + | PNP_UDP_1 |
| TF | HRGMv2_4186_31 | HRGMv2_4186_31_122 | 133104 | 133787 | + | 0037767 |
| CAZyme | HRGMv2_4186_31 | HRGMv2_4186_31_123 | 133845 | 134564 | - | CBM9 |
| CAZyme | HRGMv2_4186_31 | HRGMv2_4186_31_124 | 134633 | 135676 | - | GH105 |
| sulfatase | HRGMv2_4186_31 | HRGMv2_4186_31_125 | 135694 | 136452 | - | S1_2 |
| pfam | HRGMv2_4186_31 | HRGMv2_4186_31_126 | 136552 | 137382 | - | KduI |
| CAZyme | HRGMv2_4186_31 | HRGMv2_4186_31_127 | 137415 | 138569 | - | CE9 |
| TC | HRGMv2_4186_31 | HRGMv2_4186_31_128 | 138571 | 139014 | - | 4.A.6.1.21 |
| TC | HRGMv2_4186_31 | HRGMv2_4186_31_129 | 139075 | 139968 | - | 4.A.6.1.4 |
| TC | HRGMv2_4186_31 | HRGMv2_4186_31_130 | 139958 | 140722 | - | 4.A.6.1.4 |
| TC | HRGMv2_4186_31 | HRGMv2_4186_31_131 | 140757 | 141257 | - | 4.A.6.1.4 |
Gene ID: HRGMv2_4186_31_119
Type: CAZyme
Location: 128434 - 130854 (-)
Type: CAZyme
Location: 128434 - 130854 (-)
Gene ID: HRGMv2_4186_31_120
Type: TC
Location: 131512 - 132243 (+)
Type: TC
Location: 131512 - 132243 (+)
Gene ID: HRGMv2_4186_31_121
Type: pfam
Location: 132240 - 132977 (+)
Type: pfam
Location: 132240 - 132977 (+)
Gene ID: HRGMv2_4186_31_122
Type: TF
Location: 133104 - 133787 (+)
Type: TF
Location: 133104 - 133787 (+)
Gene ID: HRGMv2_4186_31_123
Type: CAZyme
Location: 133845 - 134564 (-)
Type: CAZyme
Location: 133845 - 134564 (-)
Gene ID: HRGMv2_4186_31_124
Type: CAZyme
Location: 134633 - 135676 (-)
Type: CAZyme
Location: 134633 - 135676 (-)
Gene ID: HRGMv2_4186_31_125
Type: sulfatase
Location: 135694 - 136452 (-)
Type: sulfatase
Location: 135694 - 136452 (-)
Gene ID: HRGMv2_4186_31_126
Type: pfam
Location: 136552 - 137382 (-)
Type: pfam
Location: 136552 - 137382 (-)
Gene ID: HRGMv2_4186_31_127
Type: CAZyme
Location: 137415 - 138569 (-)
Type: CAZyme
Location: 137415 - 138569 (-)
Gene ID: HRGMv2_4186_31_128
Type: TC
Location: 138571 - 139014 (-)
Type: TC
Location: 138571 - 139014 (-)
Gene ID: HRGMv2_4186_31_129
Type: TC
Location: 139075 - 139968 (-)
Type: TC
Location: 139075 - 139968 (-)
Gene ID: HRGMv2_4186_31_130
Type: TC
Location: 139958 - 140722 (-)
Type: TC
Location: 139958 - 140722 (-)
Gene ID: HRGMv2_4186_31_131
Type: TC
Location: 140757 - 141257 (-)
Type: TC
Location: 140757 - 141257 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Vibrionaceae
Genus
Photobacterium
Species
Photobacterium damselae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.